Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3028 141 8e-29 seq10840 118 9e-22 seq1448 100 2e-16 >seq3028 Length=62347 Score = 141 bits (156), Expect = 8e-29 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||||||||| || |||||||| || |||||||| | || | ||||||||| | | Sbjct 28317 GATGCAAATTTTCGTGAAAACTTTGACGGGTAAAACCATAACGTTGGAAGTGGAAGCATC 28258 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | ||| |||||| ||||||||||||||||||||||| || || Sbjct 28257 GGATACGATCGAGAATGTTAAAGCAAAAATCCAAGACAAGGAGGGTATTCCACCAGACCA 28198 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| || || || |||||||| || || | |||||| || || | || ||||| || Sbjct 28197 ACAGCGACTGATCTTTGCCGGGAAGCAACTGGAGGATGGTCGTACGTTATCGGATTATAA 28138 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||| || ||||| || | || || ||| Sbjct 28137 TATTCAGAAGGAATCGACGCTTCACTTGGTT 28107 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| || || || ||||| |||| | || || ||| || | Sbjct 28969 ATGCAAATTTTTGTGAAAACATTGACGGGCAAAACAATCACCTTAGAGGTTGAAGCCTCT 28910 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 28909 GATACAATCGAAAATGTGAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAG 28850 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||||||||| || || || Sbjct 28849 CAACGTCTTATTTTCGCTGG 28830 Score = 98.7 bits (108), Expect = 8e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 || ||| |||||||| || || ||||| || || || ||||| | || || |||||||| Sbjct 29751 TGCAAACATGCAAATCTTCGTAAAAACATTGACGGGAAAAACAATTACGCTAGAAGTGGA 29692 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 | | | || || | || || | ||| ||| || ||||||||||| ||||||||||| Sbjct 29691 AGCTTCAGACACGATTGAGAATGTTAAAGCAAAGATACAAGACAAGGAAGGTATTCCACC 29632 Query 22332 CGATCAACAACGTCTTATATTTGCCGG 22358 |||||||| || || || ||||| || Sbjct 29631 GGATCAACAGCGCCTGATTTTTGCTGG 29605 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||| | |||||||| || |||| | ||||||||| | | Sbjct 29369 ATGCAAATTTTTGTGAAAACTCTTACCGGTAAGACAATCACATTGGAAGTGGAAGCATCT 29310 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| ||||| || ||||| || || |||||||| ||||| Sbjct 29309 GACACCATCGAGAATGTTAAAGCGAAAATCCAGGACAAAGAAGGCATTCCACCAGATCAG 29250 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||||| | || || || || || Sbjct 29249 CAACGGTTGATTTTCGCTGGTAA 29227 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || || | || || ||||| | || || ||||| ||| || | Sbjct 28660 GATGCAGATTTTCGTCAAGACACTTACTGGCAAAACCATAACACTGGAAGTAGAAGCCTC 28601 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | || |||||||||||||||||||| || || || ||||| Sbjct 28600 AGATACTATCGAGAATGTAAAGGCCAAAATTCAAGACAAGGAGGGCATCCCTCCTGATCA 28541 Query 22338 ACAACGTCTTATATTTGCCGG 22358 ||||| ||||| ||||| || Sbjct 28540 GCAACGCCTTATTTTTGCAGG 28520 >seq10840 Length=643 Score = 118 bits (130), Expect = 9e-22 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| |||| ||||||||| | |||||||| || ||| | | Sbjct 1 ATGCAAATATTCGTGAAAACACTAACTGGTAAAACGATTACTCTTGAGGTAGAATCGTCT 60 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| ||||||||||| |||||||| |||||||| |||||| Sbjct 61 GATACCATTGAGAATGTGAAAGCTAAAATTCAAGATAAGGAGGGCATTCCACCTGATCAA 120 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||||| ||||| || || || || Sbjct 121 CAACGACTTATTTTCGCAGGTAA 143 >seq1448 Length=39285 Score = 100 bits (110), Expect = 2e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| |||||||||||||| ||||| ||||| ||||| ||| | || |||||||| ||| Sbjct 34728 TAAATATGCAAATTTTTGTAAAAACATTAACTGGTAAGACGATTACGCTTGAAGTCGAAT 34787 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 || | ||||| | || || | ||| || ||||| || ||||| || || || || | Sbjct 34788 CCTCGGATACTATTGAAAATGTAAAAGCGAAGATTCAGGATAAGGAAGGCATACCTCCAG 34847 Query 22334 ATCAACAACGTCTTATATTTGCCGG 22358 |||| ||||| | || ||||| || Sbjct 34848 ATCAGCAACGATTGATTTTTGCAGG 34872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419597249481400