Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3028 136 4e-27 >seq3028 Length=62347 Score = 136 bits (150), Expect = 4e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||||||||| || ||||| || ||||| | | || || | || || || ||| Sbjct 28114 TGAAGCGTCGATTCCTTCTGAATATTATAATCCGATAACGTACGACCATCCTCCAGTTGC 28173 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | || || ||||| ||||| || ||||| || || || ||||| |||||| Sbjct 28174 TTCCCGGCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACCCTCCTTGTCTTGGATTTTT 28233 Query 64361 TGCTTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 |||||| || ||| | ||||| || |||||||| | |||| ||| || || || Sbjct 28234 -GCTTTAACATTCTCGATCGTATCCGATGCTTCCACTTCCAACGTTATGGTTTTACCCGT 28292 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||| |||||||||||||| Sbjct 28293 CAAAGTTTTCACGAAAATTTGCAT 28316 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || ||||| || || || ||||| ||||| || |||||||| ||| || Sbjct 29605 CCAGCAAAAATCAGGCGCTGTTGATCCGGTGGAATACCTTCCTTGTCTTGTATCTTT-GC 29663 Query 64364 TTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422 |||| || ||| | || || || |||||||||| || | || || || ||||| Sbjct 29664 TTTAACATTCTCAATCGTGTCTGAAGCTTCCACTTCTAGCGTAATTGTTTTTCCCGTCAA 29723 Query 64423 AGTTTTTACGAAAATTTGCATTTT 64446 ||||||||||| |||||||| || Sbjct 29724 TGTTTTTACGAAGATTTGCATGTT 29747 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 64311 AAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACA 64369 |||| || || ||||| || || || |||||||| || ||||| ||||| ||||| ||| Sbjct 28837 AAATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATTTTG-GCTTTCACA 28895 Query 64370 ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429 || | ||||||| ||| || || |||| || | || ||||| ||||| ||||| Sbjct 28896 TTTTCGATTGTATCAGAGGCTTCAACCTCTAAGGTGATTGTTTTGCCCGTCAATGTTTTC 28955 Query 64430 ACGAAAATTTGCAT 64443 || ||||||||||| Sbjct 28956 ACAAAAATTTGCAT 28969 Score = 82.4 bits (90), Expect = 8e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 64311 AAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTA-CA 64369 |||| | ||| ||||| || || ||||| |||||||| || || ||||| |||||| || Sbjct 29237 AAATCAACCGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTC-GCTTTAACA 29295 Query 64370 ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429 ||| | || ||| || |||||||| | || | ||||| ||||| | |||||| Sbjct 29296 TTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTCTTACCGGTAAGAGTTTTC 29355 Query 64430 ACGAAAATTTGCAT 64443 || ||||||||||| Sbjct 29356 ACAAAAATTTGCAT 29369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499485163486400