Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq3028 136 4e-27
>seq3028
Length=62347
Score = 136 bits (150), Expect = 4e-27
Identities = 154/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| ||||||||| || ||||| || ||||| | | || || | || || || |||
Sbjct 28114 TGAAGCGTCGATTCCTTCTGAATATTATAATCCGATAACGTACGACCATCCTCCAGTTGC 28173
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|| |||||| | || || ||||| ||||| || ||||| || || || ||||| ||||||
Sbjct 28174 TTCCCGGCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACCCTCCTTGTCTTGGATTTTT 28233
Query 64361 TGCTTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419
|||||| || ||| | ||||| || |||||||| | |||| ||| || || ||
Sbjct 28234 -GCTTTAACATTCTCGATCGTATCCGATGCTTCCACTTCCAACGTTATGGTTTTACCCGT 28292
Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443
||||||||| ||||||||||||||
Sbjct 28293 CAAAGTTTTCACGAAAATTTGCAT 28316
Score = 91.5 bits (100), Expect = 1e-13
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || ||||| || || || ||||| ||||| || |||||||| ||| ||
Sbjct 29605 CCAGCAAAAATCAGGCGCTGTTGATCCGGTGGAATACCTTCCTTGTCTTGTATCTTT-GC 29663
Query 64364 TTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422
|||| || ||| | || || || |||||||||| || | || || || |||||
Sbjct 29664 TTTAACATTCTCAATCGTGTCTGAAGCTTCCACTTCTAGCGTAATTGTTTTTCCCGTCAA 29723
Query 64423 AGTTTTTACGAAAATTTGCATTTT 64446
||||||||||| |||||||| ||
Sbjct 29724 TGTTTTTACGAAGATTTGCATGTT 29747
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/134 (75%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 64311 AAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACA 64369
|||| || || ||||| || || || |||||||| || ||||| ||||| ||||| |||
Sbjct 28837 AAATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATTTTG-GCTTTCACA 28895
Query 64370 ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429
|| | ||||||| ||| || || |||| || | || ||||| ||||| |||||
Sbjct 28896 TTTTCGATTGTATCAGAGGCTTCAACCTCTAAGGTGATTGTTTTGCCCGTCAATGTTTTC 28955
Query 64430 ACGAAAATTTGCAT 64443
|| |||||||||||
Sbjct 28956 ACAAAAATTTGCAT 28969
Score = 82.4 bits (90), Expect = 8e-11
Identities = 100/134 (75%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 64311 AAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTA-CA 64369
|||| | ||| ||||| || || ||||| |||||||| || || ||||| |||||| ||
Sbjct 29237 AAATCAACCGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTC-GCTTTAACA 29295
Query 64370 ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429
||| | || ||| || |||||||| | || | ||||| ||||| | ||||||
Sbjct 29296 TTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTCTTACCGGTAAGAGTTTTC 29355
Query 64430 ACGAAAATTTGCAT 64443
|| |||||||||||
Sbjct 29356 ACAAAAATTTGCAT 29369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499485163486400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |