Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq3028 95.1 9e-15 >seq3028 Length=62347 Score = 95.1 bits (104), Expect = 9e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 |||||| | || | ||| || || || ||| |||||||||||||| ||||||| | Sbjct 28830 CCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCT 28889 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| |||| || ||||| ||| || |||||||| || ||||| || |||| Sbjct 28890 TTCACATTTTCGATTGTATCAGAGGCTTCAACCTCTAAGGTGATTGTTTTGCCCGTCAAT 28949 Query 15157 GTTTTTACAAAAATTTGCAT 15176 ||||| |||||||||||||| Sbjct 28950 GTTTTCACAAAAATTTGCAT 28969 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || | | | ||| || ||||| || || || || || || || ||||| Sbjct 28089 GCCACCACGAAGACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGAATATTATAATCC-- 28146 Query 15009 GAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 || || || | || || | ||| || || || | |||| ||||||||||| | Sbjct 28147 GATAACGTACGACCATCCTCCAGTTGCTTCCCGGCAAAGATCAGTCGCTGTTGGTCTGGT 28206 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTC 15125 ||||| || |||||||| ||||| ||| ||| | || || ||||| | || ||| Sbjct 28207 GGAATACCCTCCTTGTCTTGGATTTTTGCTTTAACATTCTCGATCGTATC-CGATGCTTC 28265 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || ||||||||||| |||| |||||| || ||||||||||| Sbjct 28266 CACTTCCAACGTTATGGTTTTACCCGTCAAAGTTTTCACGAAAATTTGCAT 28316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357280667924600