Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq1448 104 2e-17
seq10840 96.9 3e-15
seq3028 93.3 4e-14
>seq1448
Length=39285
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260
||||| | |||||||||||||| || || || |||||||| ||||| ||||| || |
Sbjct 34872 CCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATCCTGAATCTTCGCT 34813
Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320
|| | ||| | || || || || |||||||| || |||| ||| || || ||||
Sbjct 34812 TTTACATTTTCAATAGTATCCGAGGATTCGACTTCAAGCGTAATCGTCTTACCAGTTAAT 34753
Query 45321 GTTTTTACAAAAATTTGCAT 45340
||||||||||||||||||||
Sbjct 34752 GTTTTTACAAAAATTTGCAT 34733
>seq10840
Length=643
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| |||||| | || | |||||| || || || |||||||| || ||||||||||||||
Sbjct 143 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGTGGAATGCCCTCCTTATCTTGAATTTTA 84
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
||| | || | ||| || || || || || || ||||||| |||||| || |||
Sbjct 83 GCTTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGAGTAATCGTTTTACCAGTT 24
Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| || || ||||||||
Sbjct 23 AGTGTTTTCACGAATATTTGCAT 1
>seq3028
Length=62347
Score = 93.3 bits (102), Expect = 4e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTCCAATTG 45196
|| ||||| |||||||| || ||||||||||| | | ||| | | ||| |||| |||
Sbjct 28114 TGAAGCGTCGATTCCTTCTGAATATTATAATCCGATAACG-TACGACCATCCTCCAGTTG 28172
Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256
|| || || | |||| ||| || ||||| || ||||| || || || ||||| |||||
Sbjct 28173 CTTCCCGGCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACCCTCCTTGTCTTGGATTTT 28232
Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
| ||| | || | || || || | || ||||| | || | ||||| || ||
Sbjct 28233 TGCTTTAACATTCTCGATCGTATCCGATGCTTCCACTTCCAACGTTATGGTTTTACCCGT 28292
Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341
| |||||| || ||||||||||||
Sbjct 28293 CAAAGTTTTCACGAAAATTTGCATC 28317
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || ||| | ||||| |||||||| || || |||||||||||||| || || |||||
Sbjct 29227 TTACCAGCGAAAATCAACCGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTC 29286
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
||| | || | |||||| || | || ||||| | || | || || |||||
Sbjct 29287 GCTTTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTCTTACCGGTA 29346
Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340
|||||||| ||||||||||||||
Sbjct 29347 AGAGTTTTCACAAAAATTTGCAT 29369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451858784977600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |