Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3028 100 2e-16 >seq3028 Length=62347 Score = 100 bits (110), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 39489 ATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATC 39548 || ||| || || | ||| || ||||| || | || ||| || || ||||||||||| Sbjct 28086 ATAGCCACCACGAAGACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGAATATTATAATC 28145 Query 39549 GGCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCC 39606 | | |||| || |||| |||| ||| |||||| |||| || | ||||| || || Sbjct 28146 --CGATAACGTACGACCATCCTCCAGTTGCTTCCCGGCAAAGATCAGTCGCTGTTGGTCT 28203 Query 39607 GAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTT 39666 | || | || || ||||| |||||| ||||| || | | || || | | Sbjct 28204 GGTGGAATACCCTCCTTGTCTTGGATTTTTGCTTTAACATTCTCGATCGTATCCGATGCT 28263 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||| || || ||||||||||| |||||||| ||||| || ||||| Sbjct 28264 TCCACTTCCAACGTTATGGTTTTACCCGTCAAAGTTTTCACGAAAATTTGCAT 28316 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 39584 CAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA 39643 ||||||| | ||||| ||||||| || | ||||| ||||| ||| ||| ||||| Sbjct 29609 CAAAAATCAGGCGCTGTTGATCCGGTGGAATACCTTCCTTGTCTTGTATCTTTGCTTTAA 29668 Query 39644 TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTT 39703 || | | ||||||| |||||| || | ||||||||||| ||||| || |||| Sbjct 29669 CATTCTCAATCGTGTCTGAAGCTTCCACTTCTAGCGTAATTGTTTTTCCCGTCAATGTTT 29728 Query 39704 TTACGAAGATCTGCATGT 39721 |||||||||| ||||||| Sbjct 29729 TTACGAAGATTTGCATGT 29746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347261390027480