Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq616 174 6e-38 seq156 161 4e-34 seq10840 141 4e-28 seq3028 129 2e-24 seq1448 109 2e-18 seq11064 86.0 2e-11 >seq616 Length=68005 Score = 174 bits (192), Expect = 6e-38 Identities = 171/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 ||||| || |||||||| ||||||||| | |||||||| ||||||||| |||| ||| Sbjct 31483 AAAACCTTCGCTCCTGAGGAAATTTCAGCAATGGTTCTCGGTAAAATGAAGGAAATTGCA 31542 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 ||| ||| | || ||| | ||||||| |||| || |||||||| || ||| Sbjct 31543 GAAGCATACTTGGGAAAAGAAGTAAAACATGCAGTTGTTACAGTGCCCGCTTACTTTAAT 31602 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGA 451411 ||||||||||| ||||| || ||||||||||| |||||| ||| | |||||| |||| Sbjct 31603 GATGCACAACGACAAGCTACCAAAGATGCAGGTACTATTGCCGGTCTCAATGTTGTTCGT 31662 Query 451412 ATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 || || |||||||||||||| |||||| | || ||||| || Sbjct 31663 ATCATCAATGAACCTACAGCTGCTGCTATCGCTTATGGGCT 31703 Score = 86.0 bits (94), Expect = 2e-11 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 452315 CCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTT 452374 || ||||| ||| |||| | ||| | |||| ||||| ||||| | || | |||| Sbjct 33341 CCGCAAATCGAAGTTACTTTTGAAATCGATGTGAATGGCATTCTGCACGTCACGGCAGAG 33400 Query 452375 GAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATC 452433 || ||| | ||||| |||| |||||||| ||||| |||||| | |||||||| || Sbjct 33401 GATAAAGGTACAGGAAACA-AGAATAAAATTACGATTACAAATGATCATAACCGTTTGTC 33459 Query 452434 TAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGA 452487 |||||||||||||| ||| | | || ||||| |||||| ||||| || Sbjct 33460 ACCAGAAGATATTGAAAGGATGATCAACGATGCAGAGAAATTCGCTGATGAAGA 33513 >seq156 Length=140780 Score = 161 bits (178), Expect = 4e-34 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 ||||| | || || || ||||| ||||| || | || |||||||||||||| |||||| Sbjct 84546 CAAGTTGAATACAAGGGCGAAACGAAAACCTTCACACCAGAAGAAATTTCATCGATGGTT 84605 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 | ||| ||||| |||||||| ||| || | | ||| | | || | ||||| ||| Sbjct 84606 TTGGTTAAGATGAAGGAAACAGCTGAAGCATTTCTCGGTCATGCGGTCAAAGATGCTGTA 84665 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 || || || ||||| ||||| || || ||||||| || ||||| |||||| | || Sbjct 84666 ATCACAGTCCCCGCATATTTTAACGACTCACAACGACAGGCAACGAAAGATTCTGGTGCA 84725 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 ||||||||||| ||||| || || ||||| || ||||| || ||||||||| | || ||| Sbjct 84726 ATTGCTGGTTTGAATGTCCTGCGTATTATCAACGAACCAACTGCAGCTGCTATTGCTTAT 84785 Query 451448 GG 451449 || Sbjct 84786 GG 84787 >seq10840 Length=643 Score = 141 bits (156), Expect = 4e-28 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| |||||||| ||||||||||| ||||||||||| || ||||| ||| Sbjct 1 ATGCAAATATTCGTGAAAACACTAACTGGTAAAACGATTACTCTTGAGGTAGAATCGTCT 60 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | ||| ||||||||||||||||| || ||||| ||||||||| Sbjct 61 GATACCATTGAGAATGTGAAAGCTAAAATTCAAGATAAGGAGGGCATTCCACCTGATCAA 120 Query 391170 CAACGTTTAATTTTCTCAGGGAA 391192 ||||| | |||||| |||| || Sbjct 121 CAACGACTTATTTTCGCAGGTAA 143 >seq3028 Length=62347 Score = 129 bits (142), Expect = 2e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| |||| |||||||| || || | || || ||| |||| Sbjct 28316 ATGCAAATTTTCGTGAAAACTTTGACGGGTAAAACCATAACGTTGGAAGTGGAAGCATCG 28257 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | ||||| |||||| ||||| ||||| || ||||| || || ||| Sbjct 28256 GATACGATCGAGAATGTTAAAGCAAAAATCCAAGACAAGGAGGGTATTCCACCAGACCAA 28197 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || || | ||||| ||||| || ||||| | || || ||||||||||| Sbjct 28196 CAGCGACTGATCTTTGCCGGGAAGCAACTGGAGGATGGTCGTACGTTATCGGATTATAAT 28137 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || |||||||| || Sbjct 28136 ATTCAGAAGGAATCGACGCTTCACTTGGT 28108 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || |||||| |||| || ||||| || || | || |||||| | ||| Sbjct 28969 ATGCAAATTTTTGTGAAAACATTGACGGGCAAAACAATCACCTTAGAGGTTGAAGCCTCT 28910 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| ||||||||||| ||||||||||| || || ||||| Sbjct 28909 GATACAATCGAAAATGTGAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAG 28850 Query 391170 CAACGTTTAATTTTC 391184 |||||| | |||||| Sbjct 28849 CAACGTCTTATTTTC 28835 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || ||||| ||||| ||||| || || || || || ||| | || Sbjct 28659 ATGCAGATTTTCGTCAAGACACTTACTGGCAAAACCATAACACTGGAAGTAGAAGCCTCA 28600 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | || ||||||||||| ||||| || || ||||||||||| Sbjct 28599 GATACTATCGAGAATGTAAAGGCCAAAATTCAAGACAAGGAGGGCATCCCTCCTGATCAG 28540 Query 391170 CAACGTTTAATTTTCTCAGG 391189 ||||| | ||||| |||| Sbjct 28539 CAACGCCTTATTTTTGCAGG 28520 >seq1448 Length=39285 Score = 109 bits (120), Expect = 2e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || |||||| | |||||||| || ||||| ||||| || ||||| || Sbjct 34733 ATGCAAATTTTTGTAAAAACATTAACTGGTAAGACGATTACGCTTGAAGTCGAATCCTCG 34792 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | ||| || ||||| ||||||||||| || ||||| ||||| Sbjct 34793 GATACTATTGAAAATGTAAAAGCGAAGATTCAGGATAAGGAAGGCATACCTCCAGATCAG 34852 Query 391170 CAACGTTTAATTTTCTCAGG 391189 ||||| || ||||| |||| Sbjct 34853 CAACGATTGATTTTTGCAGG 34872 >seq11064 Length=1787 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| |||||||||||| ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 884 GCCTTCCTAGCTCAGTTGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 941 Query 509566 GTCCCACATAAGGC 509579 ||||||| ||||| Sbjct 942 GTCCCACGGAAGGC 955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975071376920480