Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq156 183 2e-40 seq616 158 9e-33 seq1352 87.8 1e-11 >seq156 Length=140780 Score = 183 bits (202), Expect = 2e-40 Identities = 264/370 (71%), Gaps = 7/370 (2%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | |||||| |||| |||||| ||||||||||| || ||||| | || ||| Sbjct 84799 TTTTTGTCCAAACCATAAGCAATAGCAGCTGCAGTTGGTTCGTTGATAATACGCAGGACA 84740 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | |||||||||| || | |||||| || || |||| |||||| |||||||||||| Sbjct 84739 TTCAAACCAGCAATTGCACCAGAATCTTTCGTTGCCTGTCGTTGTGAGTCGTTAAAATAT 84680 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || || || || || ||||| | || | | ||| | | | || || |||| Sbjct 84679 GCGGGGACTGTGATTACAGCATCTTTGACCGCATGACCGAGAAATGCTTCAGCTGTTTCC 84620 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GGGAATATTGCTTGGATTCAT 518402 ||||| ||| |||| ||| |||||||||| ||||| | ||| || || | ||| Sbjct 84619 TTCATCTTAACCAAAACCATCGATGAAATTTCTTCTGGTGTGAAGGTT--TTCGTTTCGC 84562 Query 518403 TTTGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCC 518459 | ||| |||| | | |||||| | |||| |||| || ||||| ||||||| Sbjct 84561 CCTTGTATTCAACTTGCACTTTTGGTTTACCACCACCAGCATTCATGACTTTGAATGGCC 84502 Query 518460 AGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 518519 ||| |||||||||||| || || |||| ||| | | |||||| |||||||| | Sbjct 84501 AGTGTTTCATATCTGACTGTACTGACCCATCATCAAACTTACGACCAATCAATCGTTTCG 84442 Query 518520 CATCAAAAAT 518529 |||| |||| Sbjct 84441 CATCTGAAAT 84432 Score = 107 bits (118), Expect = 1e-17 Identities = 179/259 (69%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 517626 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 517685 ||||||| ||||| | ||| ||| |||| ||| ||| || |||| |||||| || | Sbjct 85647 CTTCATCTGGATTGATGCTTTTATTGAGTTCTTTGCCAGAAAAGAAATCTGAAAGCAGCT 85588 Query 517686 GTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATT 517745 | || || |||||||| | ||||| || ||||||||||| |||||||| || | || Sbjct 85587 TTTGCACTTTTGGAATACGGGTCGATCCACCTACTAATACAATATCATGCACTTGGGCTT 85528 Query 517746 TATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGT 517805 |||||| || | || | |||| ||||| || || | | | || | | Sbjct 85527 TATCCATCTTAGCGTCTCGCAGTGCTTTCTCAACCGGATCCATGGTTGAACGGAAGAGAT 85468 Query 517806 CTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGA 517865 | | |||||||||||| || ||| | |||| || || | | |||||||| |||| Sbjct 85467 CAGCACAAAGTTCTTCAAAACGAGCACGCGTAATGTTGGTATAAAAGTCAATTCCCTCGA 85408 Query 517866 ACAAAGAATCAACTTCAAT 517884 |||| ||||||| ||| || Sbjct 85407 ACAACGAATCAATTTCGAT 85389 Score = 96.9 bits (106), Expect = 3e-14 Identities = 183/266 (69%), Gaps = 9/266 (3%) Strand=Plus/Minus Query 517141 ATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAA 517200 |||||| ||| | ||| || |||||| | ||||| |||||| | ||| | || || Sbjct 86362 ATCTGC--CTT-ATATTTTTCAGCTTCCTGCACCATTCGCTCAATCTCATCCTTTGACAA 86306 Query 517201 TCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATC---AGC 517257 | ||| || ||| ||||||||||| || || || ||| ||||| || ||| Sbjct 86305 ACGTCCCTTATCATTGGTAATAGTAATCTTATTCTGCTTTCCTGTCGATTTGTCTTGAGC 86246 Query 517258 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 517317 || | ||||| |||||||| || ||||| | ||| || || ||||||||||| || || Sbjct 86245 GGAA---ACATTCAGAATACCGTTCGCATCAATATCGAAAGTAACTTCAATTTGCGGCAC 86189 Query 517318 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 517377 || | |||||||||| || || || | ||| |||| || |||||| || || Sbjct 86188 GCCACGAGGAGCAGGTGGAATTCCAGATAATTCGAATTTTCCAAGCAAATTATTGTCCTT 86129 Query 517378 AGTGAATTTTCGTTCACCCTCGAAAA 517403 || | |||||||| ||| ||| Sbjct 86128 TGTCATAGCACGTTCACCTTCGTAAA 86103 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 322241 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 322300 ||||| || |||| ||| |||||||||||||| || || || || |||| ||||| Sbjct 84790 AAACCATAAGCAATAGCAGCTGCAGTTGGTTCGTTGATAATACGCAGGACATTCAAACCA 84731 Query 322301 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 322360 |||||| | ||||||| ||||| |||| |||| ||| ||||||||||| || || Sbjct 84730 GCAATTGCACCAGAATCTTTCGTTGCCTGTCGTTGTGAGTCGTTAAAATATGCGGGGACT 84671 Query 322361 GTAATAACTGC 322371 || || || || Sbjct 84670 GTGATTACAGC 84660 >seq616 Length=68005 Score = 158 bits (174), Expect = 9e-33 Identities = 167/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 ||| ||| |||||||| || ||||| || | ||||||||| || |||||||| || || Sbjct 31721 TTGCCTTCCTTTTTATCCAGCCCATAAGCGATAGCAGCAGCTGTAGGTTCATTGATGATA 31662 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 | | |||||| ||||| ||||| | ||||||||||| || ||||||| ||||| ||| Sbjct 31661 CGAACAACATTGAGACCGGCAATAGTACCTGCATCTTTGGTAGCTTGTCGTTGTGCATCA 31602 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT 518335 ||||| || || || || |||| ||| |||| |||||||||| || | || || | Sbjct 31601 TTAAAGTAAGCGGGCACTGTAACAACTGCATGTTTTACTTCTTTTCCCAAGTATGCTTCT 31542 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTT 518375 || ||| |||||||||| | || ||||| |||||||| Sbjct 31541 GCAATTTCCTTCATTTTACCGAGAACCATTGCTGAAATTT 31502 >seq1352 Length=23028 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 668854 AGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACG 668913 ||| |||||||| || |||||||||||||| ||||| ||||| || ||| | || || || Sbjct 4532 AGGAAAAGAAGGCCGAATTAGAGGAAATTTAATGGGCAAACGAGTGGATTTCTCGGCTCG 4591 Query 668914 TACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTAT 668973 || || ||||| | ||||| ||| | | | || |||||| || |||| | ||| Sbjct 4592 AACCGTAATTACACCAGATCCAAATCTGCCCATAGATACAGTTGGCGTGCCTCGCACTAT 4651 Query 668974 TGCTAAAAATCTTACTTTTGACGAAATTGTAAC 669006 ||| ||||| | || || |||||||| || Sbjct 4652 TGCACAAAATATGACATTCCCAGAAATTGTTAC 4684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779554028605360