Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq156 158 2e-33 seq616 131 2e-25 seq2995 82.4 1e-10 >seq156 Length=140780 Score = 158 bits (174), Expect = 2e-33 Identities = 189/257 (74%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 7058 TCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGT 7117 ||||| || || || ||||||| |||||||| || ||| |||| || | || | | Sbjct 85645 TCATCTGGATTGATGCTTTTATTGAGTTCTTTGCCAGAAAAGAAATCTGAAAGCAGCTTT 85586 Query 7118 TGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTA 7177 || | ||| || || || ||||||||||| || || || || |||| ||||| | |||| Sbjct 85585 TGCACTTTTGGAATACGGGTCGATCCACCTACTAATACAATATCATGCACTTGGGCTTTA 85526 Query 7178 TCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCC 7237 || ||||| | |||||| |||| ||| || || || ||||| | |||||| | || Sbjct 85525 TCCATCTTAGCGTCTCGCAGTGCTTTCTCAACCGGATCCATGGTTGAACGGAAGAGATCA 85466 Query 7238 ATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTAT 7297 ||| ||||| |||||||| ||||| |||||| ||||| || |||| || ||| | Sbjct 85465 GCACAAAGTTCTTCAAAACGAGCACGCGTAATGTTGGTATAAAAGTCAATTCCCTCGAAC 85406 Query 7298 AACGAATCAATTTCAAT 7314 |||||||||||||| || Sbjct 85405 AACGAATCAATTTCGAT 85389 Score = 132 bits (146), Expect = 6e-26 Identities = 218/312 (70%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 || || || | ||| || || ||||| || || |||||||| || |||||||| || ||| Sbjct 84799 TTTTTGTCCAAACCATAAGCAATAGCAGCTGCAGTTGGTTCGTTGATAATACGCAGGACA 84740 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 |||| |||||||| | | | ||||||||| || |||||||| || |||||||| || Sbjct 84739 -TTCAAACCAGCAATTGCACCAGAATCTTTCGTTGCCTGTCGTTGTGAGTCGTTAAAATA 84681 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 || ||||| || | || || || |||| | ||||||| | | ||| || | || Sbjct 84680 TGCGGGGACTGTGATTACAGCATCTTTGACCGCATGACCGAGAAATGCTTCAGCTGTTTC 84621 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACC 7833 ||||| || | ||||||||||||||| ||||| | | || ||||||||| || Sbjct 84620 CTTCATCTTAACCAAAACCATCGATGAAATTTCTTCTGGTGTGAAGGTTTTCGTTTCGCC 84561 Query 7834 GTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCA 7893 || | ||||||| | | |||||| | || || | || || || | | ||| Sbjct 84560 CTTGTATTCAACTTGCACTTTTGGTTTACCACCACCAGCATTCATGACTTTGAATGGCCA 84501 Query 7894 ATCTTTCATATC 7905 | ||||||||| Sbjct 84500 GTGTTTCATATC 84489 Score = 125 bits (138), Expect = 9e-24 Identities = 239/345 (69%), Gaps = 14/345 (4%) Strand=Plus/Minus Query 6497 TCGACCGTTCCTTTCAT-TTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTC-----G 6550 |||| |||| |||||| |||| || || || ||||| |||| ||||| | | Sbjct 86439 TCGATCGTTTGTTTCATATTGAACGCATAAGATT-CGAGAGCATTTTTCGCTGCAATGCG 86381 Query 6551 ACCTTTTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTT 6610 | |||| | ||| |||||| || | ||||| ||||| || || || ||||| Sbjct 86380 ATCTTTCT-GCGC----TTCATCATCTGCCTTATATTTTTCAGCTTCCTGCACCATTCGC 86326 Query 6611 TCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTT 6669 ||||| || || || || || | ||||||||||| ||||| |||||||| ||| | ||| Sbjct 86325 TCAATCTCATCCTTTGACAAACGTCCCTTATCATTGGTAATAGTAATCTTATTCTGCTTT 86266 Query 6670 ACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCT 6729 || | | || |||| ||| ||||||| |||||| || ||||||| |||||| | Sbjct 86265 -CCTGTCGATTTGTCTTGAGCGGAAACATTCAGAATACCGTTCGCATCAATATCGAAAGT 86207 Query 6730 TACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACC 6789 || | |||||| || || | || || | |||||| || | ||| || ||| | || Sbjct 86206 AACTTCAATTTGCGGCACGCCACGAGGAGCAGGTGGAATTCCAGATAATTCGAATTTTCC 86147 Query 6790 AAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGAC 6834 ||| ||| | || ||| | | | | |||||||||||| || || Sbjct 86146 AAGCAAATTATTGTCCTTTGTCATAGCACGTTCACCTTCGTAAAC 86102 >seq616 Length=68005 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || ||||| || || || |||||||| || || || |||||||| || ||||||| | Sbjct 31712 TTTTTATCCAGCCCATAAGCGATAGCAGCAGCTGTAGGTTCATTGATGATACGAACAACA 31653 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || |||||||| | |||||||| || ||||||||||| | ||| |||||||| Sbjct 31652 TTGAGACCGGCAATAGTACCTGCATCTTTGGTAGCTTGTCGTTGTGCATCATTAAAGTAA 31593 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || || || || || | | |||| || || | || | ||| || || || Sbjct 31592 GCGGGCACTGTAACAACTGCATGTTTTACTTCTTTTCCCAAGTATGCTTCTGCAATTTCC 31533 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 |||||||| |||||||| | |||||| || |||| Sbjct 31532 TTCATTTTACCGAGAACCATTGCTGAAATTTCCTCAG 31496 Score = 86.0 bits (94), Expect = 8e-12 Identities = 173/254 (68%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 6587 TTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTC 6646 || || ||||| | || |||| ||||||| |||||| || || | | |||||| Sbjct 33498 TTCTCTGCATCGTTGATCATCCTTTCAATATCTTCTGGTGACAAACGGTTATGATCATTT 33439 Query 6647 GTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAAT 6705 ||||||||||| || ||| ||| || | | ||||| || || | || | || ||| Sbjct 33438 GTAATCGTAATTTTATTCTTGTTT-CCTGTACCTTTATCCTCTGCCGTGACGTGCAGAAT 33380 Query 6706 ACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGG 6765 ||||| |||| | || || | || | ||||| ||| ||| | ||||| | ||| Sbjct 33379 GCCATTCACATCGATTTCAAAAGTAACTTCGATTTGCGGTACACCTCGGGGTGCTGGTGG 33320 Query 6766 AATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACC 6825 ||||| || ||||||||| |||| || | |||||| ||| | | || || || Sbjct 33319 GATACCTGTCAAATCAAATTTACCCAGGATGTGGTTATCTTTCGTCATTGGCCGCTCGCC 33260 Query 6826 TTCATAGACTTTAA 6839 |||||| || |||| Sbjct 33259 TTCATAAACCTTAA 33246 >seq2995 Length=21460 Score = 82.4 bits (90), Expect = 1e-10 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 22423 GGTCTAACAAAAACGTGTAA-ATTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGT 22481 ||| ||||||| | | |||| |||||||||||| || ||||| || || || ||||||| Sbjct 20506 GGTTTAACAAATA-GAGTAAGATTTTATCAGGCTTCAACATCTGAACTATATGGTAAAGC 20448 Query 22482 AAATGAAACTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGG 22535 | ||| || ||||| |||| ||||| ||||| || |||||||| ||||| Sbjct 20447 ACTGGAAGTGCCTCAAAAAGAAACGACACCCTTTTATCCTCGTTCACCTTATGG 20394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634929875070400