Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3028 145 2e-29 seq10840 118 2e-21 >seq3028 Length=62347 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || || || || |||||||| ||||| | | || | ||||| || Sbjct 28107 AACCAAGTGAAGCGTCGATTCCTTCTGAATATTATAATCCGATAACGTACGACCATCCTC 28166 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || ||||| || || ||||| ||||| ||||||||||| ||||| || || |||||||| Sbjct 28167 CAGTTGCTTCCCGGCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACCCTCCTTGTCTTG 28226 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| || || ||||| || || ||||| ||||||||| | || | || || Sbjct 28227 GATTTTTGCTTTAACATTCTCGATCGTATCCGATGCTTCCACTTCCAACGTTATGGTTTT 28286 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||||||| ||||| | |||||| Sbjct 28287 ACCCGTCAAAGTTTTCACGAAAATTTGCAT 28316 Score = 116 bits (128), Expect = 8e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || || || || ||||| || || ||||| ||||| |||||||| || ||| Sbjct 29603 TACCAGCAAAAATCAGGCGCTGTTGATCCGGTGGAATACCTTCCTTGTCTTGTATCTTTG 29662 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || |||||||| ||||| ||| ||||||||| || |||| || ||||| |||| Sbjct 29663 CTTTAACATTCTCAATCGTGTCTGAAGCTTCCACTTCTAGCGTAATTGTTTTTCCCGTCA 29722 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 | ||||||||||| | |||||| Sbjct 29723 ATGTTTTTACGAAGATTTGCAT 29744 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| ||||| || | ||||| || ||||| ||||||||||||||||| || ||||| Sbjct 29227 TTACCAGCGAAAATCAACCGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTC 29286 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || ||||| |||||||| || ||||||||| | || | ||||| || || Sbjct 29287 GCTTTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTCTTACCGGTA 29346 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | |||||| Sbjct 29347 AGAGTTTTCACAAAAATTTGCAT 29369 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||| || ||||| ||||| || || ||||| ||||| || |||||||||||||| Sbjct 28518 TACCTGCAAAAATAAGGCGTTGCTGATCAGGAGGGATGCCCTCCTTGTCTTGAATTTTGG 28577 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||| || ||||| || || || || ||| ||||| || || | || || || || | Sbjct 28578 CCTTTACATTCTCGATAGTATCTGAGGCTTCTACTTCCAGTGTTATGGTTTTGCCAGTAA 28637 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 || || ||||| | ||||| Sbjct 28638 GTGTCTTGACGAAAATCTGCAT 28659 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 || |||| ||||| ||||| ||||| || ||||| || || ||||| ||||||||||||| Sbjct 28825 GCATACCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATTT 28884 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | || || || || || || || || ||| || || | ||| | || || || | Sbjct 28885 TGGCTTTCACATTTTCGATTGTATCAGAGGCTTCAACCTCTAAGGTGATTGTTTTGCCCG 28944 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || || | |||||| Sbjct 28945 TCAATGTTTTCACAAAAATTTGCAT 28969 >seq10840 Length=643 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||||||||| |||||||||||||| || || |||||||| || || ||||||||||| Sbjct 143 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGTGGAATGCCCTCCTTATCTTGAATTTTA 84 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || ||||||||||| || || ||| || ||||| |||| ||| || || || Sbjct 83 GCTTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGAGTAATCGTTTTACCAGTT 24 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | |||||| Sbjct 23 AGTGTTTTCACGAATATTTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109118258644520