Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1462 84.2 2e-11 >seq1462 Length=36103 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/242 (69%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 48114 GTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA 48173 ||||| || ||||||||| | | || || || || ||||| ||||||||| ||| Sbjct 15495 GTATACAATTTCTCAAATGCCTTGCCCCACGAATCTTCCAACCCTGGACATTCAGCTGGA 15554 Query 48174 CACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAA 48233 ||||| |||||||| | ||| | || | ||| || | |||||||| ||| Sbjct 15555 CACATTAATGACCATATTTTATCGTCACGCACACGTTCCATGAAAAGATCTGGTACCCAT 15614 Query 48234 AGAGCTATAAATAAATCCCTA----GTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAG 48289 | | | | |||||||| | | |||| ||||| ||| | || |||| || | || Sbjct 15615 AAACCAAGGAATAAATCACGACAACGTTCG-AGTTCATCAC--CTAC-ATTCTTTCTGAG 15670 Query 48290 TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349 || ||||| || | ||||| ||||||||||| || ||||| || || | | | ||||| Sbjct 15671 CTCTAGAAATTCAAAAATATCTGCATGCCATGGCTCCAAATAAATAGCAAATGCGCCTGG 15730 Query 48350 TC 48351 || Sbjct 15731 TC 15732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561929206238400