Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq156 170 2e-36 seq616 134 1e-25 seq10840 109 4e-18 seq3028 95.1 1e-13 seq1448 91.5 1e-12 >seq156 Length=140780 Score = 170 bits (188), Expect = 2e-36 Identities = 254/358 (71%), Gaps = 7/358 (2%) Strand=Plus/Plus Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 |||| ||||| ||||| || ||||| | | ||| ||||| | | || ||| ||||| Sbjct 84432 ATTTCAGATGCGAAACGATTGATTGGTCGTAAGTTTGATGATGGGTCAGTACAGTCAGAT 84491 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAAGCT 550291 ||||| || ||||| ||| || | | |||| | ||| ||||| | | ||| | Sbjct 84492 ATGAAACACTGGCCATTCAAAGTCATGAATGCTGGTGGTGGTAAACCAAAAGTGCAAGTT 84551 Query 550292 --ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | || | || | || | || |||||||| |||||||||| |||||||| Sbjct 84552 GAATACAAGGGCGAAACGAAAACC--TTCACACCAGAAGAAATTTCATCGATGGTTTTGG 84609 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 | || ||||| ||||||| || ||| | ||||| | || | ||||| ||||| | Sbjct 84610 TTAAGATGAAGGAAACAGCTGAAGCATTTCTCGGTCATGCGGTCAAAGATGCTGTAATCA 84669 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || || ||||||||||| ||||||||||| || || || |||||| |||| |||| Sbjct 84670 CAGTCCCCGCATATTTTAACGACTCACAACGACAGGCAACGAAAGATTCTGGTGCAATTG 84729 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||| | ||||| || ||||||||||| ||||| ||||| ||||| |||| ||||| Sbjct 84730 CTGGTTTGAATGTCCTGCGTATTATCAACGAACCAACTGCAGCTGCTATTGCTTATGG 84787 Score = 105 bits (116), Expect = 5e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 552220 AGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAA 552279 |||| || || |||||||| ||| | || ||||||||||||||||| | | ||| Sbjct 85787 AGGCCGTGGCATATGGTGCAGCAGTACAGGCAGCTATTCTTTCTGGTGATAAGTCGGAAG 85846 Query 552280 AACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTG 552339 | || || | |||| | || || | || || || |||||| | ||||||| || Sbjct 85847 CTGTCCAGGATTTATTACTACTCGACGTCGCACCACTTTCACTTGGTATTGAAACAGCTG 85906 Query 552340 GAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTG 552399 ||||| |||||||| ||||||| | | ||||||||||| || |||| ||||| Sbjct 85907 GAGGTGTTATGACTGCTCTTATCAAGCGGAATACTACTATCCCGACGAAAACATCTCAGA 85966 Query 552400 TATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442 |||| | || || || || |||||| ||| |||| ||||| Sbjct 85967 CATTTACCACATACTCTGACAATCAACCTGGTGTTCTCATTCA 86009 Score = 102 bits (112), Expect = 7e-16 Identities = 182/262 (69%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 551963 TATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAA 552022 ||| ||| | ||||| || || ||||||||||| | | |||| ||| || | || Sbjct 85388 TATCGAAATTGATTCGTTGTTCGAGGGAATTGACTTTTATACCAACATTACGCGTGCTCG 85447 Query 552023 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTT 552082 |||||||| ||||| |||||||||| | ||| || || || || || ||| | Sbjct 85448 TTTTGAAGAACTTTGTGCTGATCTCTTCCGTTCAACCATGGATCCGGTTGAGAAAGCACT 85507 Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142 |||| | ||||| |||||| || |||| ||||| ||||| | || |||||||| || Sbjct 85508 GCGAGACGCTAAGATGGATAAAGCCCAAGTGCATGATATTGTATTAGTAGGTGGATCGAC 85567 Query 552143 AAGAATTCCTAAAATTCGCGAAA--TG--TTAAGTTCTTATTTCAATGGTAAAAAATTAA 552198 | ||||| ||| | || ||| || || || | | |||| ||| ||| || | | Sbjct 85568 CCGTATTCCAAAAGT--GCAAAAGCTGCTTTCAGATTTCTTTTC--TGGCAAAGAACTCA 85623 Query 552199 ATGAAAGTGTTAATCCAGATGA 552220 || |||| | ||||||||||| Sbjct 85624 ATAAAAGCATCAATCCAGATGA 85645 Score = 102 bits (112), Expect = 7e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527 || || || |||||| ||||| | || | ||| || ||||| |||||||||||| Sbjct 86126 ACAAAGGACAATAATTTGCTTGGAAAATTCGAATTATCTGGAATTCCACCTGCTCCTCGT 86185 Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587 || || |||||||||||||||||||||||||| ||||| || || ||| ||||||| | Sbjct 86186 GGCGTGCCGCAAATTGAAGTTACTTTCGATATTGATGCGAACGGTATTCTGAATGTTTCC 86245 Query 552588 GCTTGTGATAAATC 552601 ||| || ||||| Sbjct 86246 GCTCAAGACAAATC 86259 >seq616 Length=68005 Score = 134 bits (148), Expect = 1e-25 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 550329 AAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAG 550388 |||||||| | |||||| | |||||||| ||| || || | | || ||| Sbjct 31502 AAATTTCAGCAATGGTTCTCGGTAAAATGAAGGAAATTGCAGAAGCATACTTGGGAAAAG 31561 Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| | ||||||| | || || || || || |||||||| ||||||| ||||||| Sbjct 31562 AAGTAAAACATGCAGTTGTTACAGTGCCCGCTTACTTTAATGATGCACAACGACAAGCTA 31621 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | |||||||| || |||||| || || |||||| ||||||| |||||||||||||| | Sbjct 31622 CCAAAGATGCAGGTACTATTGCCGGTCTCAATGTTGTTCGTATCATCAATGAACCTACAG 31681 Query 550509 CTGCTGCACTTGCATATGGACTTGATAAA 550537 ||||||| | || ||||| || |||||| Sbjct 31682 CTGCTGCTATCGCTTATGGGCTGGATAAA 31710 Score = 91.5 bits (100), Expect = 1e-12 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 ||||||||||| || || || ||||| || ||| |||| || | || |||| || Sbjct 32801 AATCCAGATGAAGCAGTAGCATATGGCGCAGCAGTTCAGGCTGGCGTTATTTCGGG---- 32856 Query 552270 ACTGATGAAA-AACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328 ||| |||| ||| |||||||| | ||||||| | |||| | |||||||| | Sbjct 32857 --TGAAGAAAGCACT-GGTGATATTGTATTGTTAGATGTGAATCCTTTGACTCTTGGTAT 32913 Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388 || ||| |||| ||| ||||||| || ||||| | || || ||| ||||||| ||| Sbjct 32914 TGAGACAATTGGTGGTGTTATGACCAAACTTATTCAAAGGAACACTGTTATTCCTACTAA 32973 Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442 ||| || | || |||||| | |||||||| | | ||||| ||||| Sbjct 32974 GAAAAGTCAGATCTTCTCTACGGCAGCTGATAATCAGCCAACAGTTACCATTCA 33027 Score = 89.7 bits (98), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 361703 AGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCC 361762 || |||||||| | | ||||||||| ||||| || || || || ||||||||| || Sbjct 31703 AGCCCATAAGCGATAGCAGCAGCTGTAGGTTCATTGATGATACGAACAACATTGAGACCG 31644 Query 361763 GCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACA 361822 || || | ||||||| || ||||| ||||||||||||||||| || || || || Sbjct 31643 GCAATAGTACCTGCATCTTTGGTAGCTTGTCGTTGTGCATCATTAAAGTAAGCGGGCACT 31584 Query 361823 GTAATCACTGCTTTTTCAACTT 361844 |||| ||||| | || |||| Sbjct 31583 GTAACAACTGCATGTTTTACTT 31562 >seq10840 Length=643 Score = 109 bits (120), Expect = 4e-18 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || || |||||||||| ||| |||||||| ||||| || || |||||||||||||| Sbjct 143 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGTGGAATGCCCTCCTTATCTTGAATTTTA 84 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 ||| || |||||| ||||||| | ||| || ||||||| ||||||||||| Sbjct 83 GCTTTCACATTCTCAATGGTATCAGACGATTCTAC-CTCAAGAGTAATCGTTTTACCAGT 25 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||| |||||||| Sbjct 24 TAGTGTTTTCACGAATATTTGCAT 1 >seq3028 Length=62347 Score = 95.1 bits (104), Expect = 1e-13 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | ||||| || ||| || |||||| ||||| | || || | Sbjct 28099 AGACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGAATATTATAATCCGATAACGTACGA 28158 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || ||||| || |||||||| || |||| || || || || ||||| || || Sbjct 28159 CCATCCTCCAGTTGCTTCCCGGCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACCCTCC 28218 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || ||||| |||||| ||| || ||| || ||||| | || | || ||| | || Sbjct 28219 TTGTCTTGGATTTTTGCTTTAACATTCTCGATCGTATCCGA-TGCTTCCACTTCCAACGT 28277 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | |||||||| || | |||||| |||||||||||||| Sbjct 28278 TATGGTTTTACCCGTCAAAGTTTTCACGAAAATTTGCAT 28316 Score = 91.5 bits (100), Expect = 1e-12 Identities = 108/145 (74%), Gaps = 10/145 (7%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||||||||| | ||||||||||||||| || || || || ||||||||||| Sbjct 28520 CCTGCAAAAATAAGGCGTTGCTGATCAGGAGGGATGCCCTCCTTGTCTTGAATTTTGGCC 28579 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAG-----TACATTCGAGAGTAACAGTTTTACCAG 563449 ||||| ||| || ||||| |||| ||| ||| || || | ||||| |||| Sbjct 28580 TTTACATTCTCGATAGTATC----TGAGGCTTCTAC-TTCCAGTGTTATGGTTTTGCCAG 28634 Query 563450 TAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || || |||||||| ||||| Sbjct 28635 TAAGTGTCTTGACGAAAATCTGCAT 28659 >seq1448 Length=39285 Score = 91.5 bits (100), Expect = 1e-12 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | || ||||||||| ||||| || ||||| ||||| ||||| || | Sbjct 34872 CCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATCCTGAATCTTCGCT 34813 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||||| ||||| | | || | | ||| || |||| || |||||||| | Sbjct 34812 TTTACATTTTCAATAGTATCCGAG-GATTCGACTTCAAGCGTAATCGTCTTACCAGTTAA 34754 Query 563454 AGTTTTAACGAAAATTTGCATA 563475 ||||| || |||||||||||| Sbjct 34753 TGTTTTTACAAAAATTTGCATA 34732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027944271924400