Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq156 170 2e-36
seq616 134 1e-25
seq10840 109 4e-18
seq3028 95.1 1e-13
seq1448 91.5 1e-12
>seq156
Length=140780
Score = 170 bits (188), Expect = 2e-36
Identities = 254/358 (71%), Gaps = 7/358 (2%)
Strand=Plus/Plus
Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234
|||| ||||| ||||| || ||||| | | ||| ||||| | | || ||| |||||
Sbjct 84432 ATTTCAGATGCGAAACGATTGATTGGTCGTAAGTTTGATGATGGGTCAGTACAGTCAGAT 84491
Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAAGCT 550291
||||| || ||||| ||| || | | |||| | ||| ||||| | | ||| |
Sbjct 84492 ATGAAACACTGGCCATTCAAAGTCATGAATGCTGGTGGTGGTAAACCAAAAGTGCAAGTT 84551
Query 550292 --ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349
| || | || | || | || |||||||| |||||||||| ||||||||
Sbjct 84552 GAATACAAGGGCGAAACGAAAACC--TTCACACCAGAAGAAATTTCATCGATGGTTTTGG 84609
Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409
| || ||||| ||||||| || ||| | ||||| | || | ||||| ||||| |
Sbjct 84610 TTAAGATGAAGGAAACAGCTGAAGCATTTCTCGGTCATGCGGTCAAAGATGCTGTAATCA 84669
Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469
| || || ||||||||||| ||||||||||| || || || |||||| |||| ||||
Sbjct 84670 CAGTCCCCGCATATTTTAACGACTCACAACGACAGGCAACGAAAGATTCTGGTGCAATTG 84729
Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
|||| | ||||| || ||||||||||| ||||| ||||| ||||| |||| |||||
Sbjct 84730 CTGGTTTGAATGTCCTGCGTATTATCAACGAACCAACTGCAGCTGCTATTGCTTATGG 84787
Score = 105 bits (116), Expect = 5e-17
Identities = 157/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 552220 AGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAA 552279
|||| || || |||||||| ||| | || ||||||||||||||||| | | |||
Sbjct 85787 AGGCCGTGGCATATGGTGCAGCAGTACAGGCAGCTATTCTTTCTGGTGATAAGTCGGAAG 85846
Query 552280 AACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTG 552339
| || || | |||| | || || | || || || |||||| | ||||||| ||
Sbjct 85847 CTGTCCAGGATTTATTACTACTCGACGTCGCACCACTTTCACTTGGTATTGAAACAGCTG 85906
Query 552340 GAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTG 552399
||||| |||||||| ||||||| | | ||||||||||| || |||| |||||
Sbjct 85907 GAGGTGTTATGACTGCTCTTATCAAGCGGAATACTACTATCCCGACGAAAACATCTCAGA 85966
Query 552400 TATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442
|||| | || || || || |||||| ||| |||| |||||
Sbjct 85967 CATTTACCACATACTCTGACAATCAACCTGGTGTTCTCATTCA 86009
Score = 102 bits (112), Expect = 7e-16
Identities = 182/262 (69%), Gaps = 8/262 (3%)
Strand=Plus/Plus
Query 551963 TATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAA 552022
||| ||| | ||||| || || ||||||||||| | | |||| ||| || | ||
Sbjct 85388 TATCGAAATTGATTCGTTGTTCGAGGGAATTGACTTTTATACCAACATTACGCGTGCTCG 85447
Query 552023 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTT 552082
|||||||| ||||| |||||||||| | ||| || || || || || ||| |
Sbjct 85448 TTTTGAAGAACTTTGTGCTGATCTCTTCCGTTCAACCATGGATCCGGTTGAGAAAGCACT 85507
Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142
|||| | ||||| |||||| || |||| ||||| ||||| | || |||||||| ||
Sbjct 85508 GCGAGACGCTAAGATGGATAAAGCCCAAGTGCATGATATTGTATTAGTAGGTGGATCGAC 85567
Query 552143 AAGAATTCCTAAAATTCGCGAAA--TG--TTAAGTTCTTATTTCAATGGTAAAAAATTAA 552198
| ||||| ||| | || ||| || || || | | |||| ||| ||| || | |
Sbjct 85568 CCGTATTCCAAAAGT--GCAAAAGCTGCTTTCAGATTTCTTTTC--TGGCAAAGAACTCA 85623
Query 552199 ATGAAAGTGTTAATCCAGATGA 552220
|| |||| | |||||||||||
Sbjct 85624 ATAAAAGCATCAATCCAGATGA 85645
Score = 102 bits (112), Expect = 7e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527
|| || || |||||| ||||| | || | ||| || ||||| ||||||||||||
Sbjct 86126 ACAAAGGACAATAATTTGCTTGGAAAATTCGAATTATCTGGAATTCCACCTGCTCCTCGT 86185
Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587
|| || |||||||||||||||||||||||||| ||||| || || ||| ||||||| |
Sbjct 86186 GGCGTGCCGCAAATTGAAGTTACTTTCGATATTGATGCGAACGGTATTCTGAATGTTTCC 86245
Query 552588 GCTTGTGATAAATC 552601
||| || |||||
Sbjct 86246 GCTCAAGACAAATC 86259
>seq616
Length=68005
Score = 134 bits (148), Expect = 1e-25
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 550329 AAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAG 550388
|||||||| | |||||| | |||||||| ||| || || | | || |||
Sbjct 31502 AAATTTCAGCAATGGTTCTCGGTAAAATGAAGGAAATTGCAGAAGCATACTTGGGAAAAG 31561
Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448
|||| | ||||||| | || || || || || |||||||| ||||||| |||||||
Sbjct 31562 AAGTAAAACATGCAGTTGTTACAGTGCCCGCTTACTTTAATGATGCACAACGACAAGCTA 31621
Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508
| |||||||| || |||||| || || |||||| ||||||| |||||||||||||| |
Sbjct 31622 CCAAAGATGCAGGTACTATTGCCGGTCTCAATGTTGTTCGTATCATCAATGAACCTACAG 31681
Query 550509 CTGCTGCACTTGCATATGGACTTGATAAA 550537
||||||| | || ||||| || ||||||
Sbjct 31682 CTGCTGCTATCGCTTATGGGCTGGATAAA 31710
Score = 91.5 bits (100), Expect = 1e-12
Identities = 162/234 (69%), Gaps = 8/234 (3%)
Strand=Plus/Plus
Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269
||||||||||| || || || ||||| || ||| |||| || | || |||| ||
Sbjct 32801 AATCCAGATGAAGCAGTAGCATATGGCGCAGCAGTTCAGGCTGGCGTTATTTCGGG---- 32856
Query 552270 ACTGATGAAA-AACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328
||| |||| ||| |||||||| | ||||||| | |||| | |||||||| |
Sbjct 32857 --TGAAGAAAGCACT-GGTGATATTGTATTGTTAGATGTGAATCCTTTGACTCTTGGTAT 32913
Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388
|| ||| |||| ||| ||||||| || ||||| | || || ||| ||||||| |||
Sbjct 32914 TGAGACAATTGGTGGTGTTATGACCAAACTTATTCAAAGGAACACTGTTATTCCTACTAA 32973
Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442
||| || | || |||||| | |||||||| | | ||||| |||||
Sbjct 32974 GAAAAGTCAGATCTTCTCTACGGCAGCTGATAATCAGCCAACAGTTACCATTCA 33027
Score = 89.7 bits (98), Expect = 4e-12
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 361703 AGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCC 361762
|| |||||||| | | ||||||||| ||||| || || || || ||||||||| ||
Sbjct 31703 AGCCCATAAGCGATAGCAGCAGCTGTAGGTTCATTGATGATACGAACAACATTGAGACCG 31644
Query 361763 GCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACA 361822
|| || | ||||||| || ||||| ||||||||||||||||| || || || ||
Sbjct 31643 GCAATAGTACCTGCATCTTTGGTAGCTTGTCGTTGTGCATCATTAAAGTAAGCGGGCACT 31584
Query 361823 GTAATCACTGCTTTTTCAACTT 361844
|||| ||||| | || ||||
Sbjct 31583 GTAACAACTGCATGTTTTACTT 31562
>seq10840
Length=643
Score = 109 bits (120), Expect = 4e-18
Identities = 112/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || || |||||||||| ||| |||||||| ||||| || || ||||||||||||||
Sbjct 143 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGTGGAATGCCCTCCTTATCTTGAATTTTA 84
Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450
||| || |||||| ||||||| | ||| || ||||||| |||||||||||
Sbjct 83 GCTTTCACATTCTCAATGGTATCAGACGATTCTAC-CTCAAGAGTAATCGTTTTACCAGT 25
Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474
|| ||||| ||||| ||||||||
Sbjct 24 TAGTGTTTTCACGAATATTTGCAT 1
>seq3028
Length=62347
Score = 95.1 bits (104), Expect = 1e-13
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
||||| || || | ||||| || ||| || |||||| ||||| | || || |
Sbjct 28099 AGACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGAATATTATAATCCGATAACGTACGA 28158
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
||| || ||||| || |||||||| || |||| || || || || ||||| || ||
Sbjct 28159 CCATCCTCCAGTTGCTTCCCGGCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACCCTCC 28218
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435
|| ||||| |||||| ||| || ||| || ||||| | || | || ||| | ||
Sbjct 28219 TTGTCTTGGATTTTTGCTTTAACATTCTCGATCGTATCCGA-TGCTTCCACTTCCAACGT 28277
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| |||||||| || | |||||| ||||||||||||||
Sbjct 28278 TATGGTTTTACCCGTCAAAGTTTTCACGAAAATTTGCAT 28316
Score = 91.5 bits (100), Expect = 1e-12
Identities = 108/145 (74%), Gaps = 10/145 (7%)
Strand=Plus/Plus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| ||||||||||| | ||||||||||||||| || || || || |||||||||||
Sbjct 28520 CCTGCAAAAATAAGGCGTTGCTGATCAGGAGGGATGCCCTCCTTGTCTTGAATTTTGGCC 28579
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAG-----TACATTCGAGAGTAACAGTTTTACCAG 563449
||||| ||| || ||||| |||| ||| ||| || || | ||||| ||||
Sbjct 28580 TTTACATTCTCGATAGTATC----TGAGGCTTCTAC-TTCCAGTGTTATGGTTTTGCCAG 28634
Query 563450 TAAGAGTTTTAACGAAAATTTGCAT 563474
|||| || || |||||||| |||||
Sbjct 28635 TAAGTGTCTTGACGAAAATCTGCAT 28659
>seq1448
Length=39285
Score = 91.5 bits (100), Expect = 1e-12
Identities = 107/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| | || ||||||||| ||||| || ||||| ||||| ||||| || |
Sbjct 34872 CCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATCCTGAATCTTCGCT 34813
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||||| ||||| | | || | | ||| || |||| || |||||||| |
Sbjct 34812 TTTACATTTTCAATAGTATCCGAG-GATTCGACTTCAAGCGTAATCGTCTTACCAGTTAA 34754
Query 563454 AGTTTTAACGAAAATTTGCATA 563475
||||| || ||||||||||||
Sbjct 34753 TGTTTTTACAAAAATTTGCATA 34732
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4027944271924400
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