Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq1448 122 7e-23
seq10840 114 1e-20
seq3028 105 5e-18
>seq1448
Length=39285
Score = 122 bits (134), Expect = 7e-23
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||||||||| ||||| || || ||||| || || |||||||| ||||| ||||| ||
Sbjct 34874 TACCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATCCTGAATCTTCG 34815
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| |||| | ||| || || | ||| |||||||| || | ||| || || ||||
Sbjct 34814 CTTTTACATTTTCAATAGTATCCGAGGATTCGACTTCAAGCGTAATCGTCTTACCAGTTA 34755
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
| ||||||||||| || |||||
Sbjct 34754 ATGTTTTTACAAAAATTTGCAT 34733
>seq10840
Length=643
Score = 114 bits (126), Expect = 1e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|||||||| || || | || |||||||| || |||||||| || ||||||||||||||
Sbjct 143 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGTGGAATGCCCTCCTTATCTTGAATTTTA 84
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| | || | || ||||||| ||| || |||||||| | |||||| || |||
Sbjct 83 GCTTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGAGTAATCGTTTTACCAGTT 24
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| ||||| || ||||| |||||
Sbjct 23 AGTGTTTTCACGAATATTTGCAT 1
>seq3028
Length=62347
Score = 105 bits (116), Expect = 5e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||| || || ||||| || || ||||| || |||||||||||||| || || |||||
Sbjct 29227 TTACCAGCGAAAATCAACCGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTC 29286
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| | || | |||||||| | ||||||||| | |||| || || |||||
Sbjct 29287 GCTTTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTCTTACCGGTA 29346
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| |||||| ||||| || |||||
Sbjct 29347 AGAGTTTTCACAAAAATTTGCAT 29369
Score = 105 bits (116), Expect = 5e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||| ||||||||||| || ||||| ||||| || ||||| || |||
Sbjct 29603 TACCAGCAAAAATCAGGCGCTGTTGATCCGGTGGAATACCTTCCTTGTCTTGTATCTTTG 29662
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||| ||| | || | ||||| || | ||||||||| || || | ||||| || || |
Sbjct 29663 CTTTAACATTCTCAATCGTGTCTGAAGCTTCCACTTCTAGCGTAATTGTTTTTCCCGTCA 29722
Query 101448 AAGTTTTTACAAATATCTGCATGGTT 101473
| |||||||| || || |||||| ||
Sbjct 29723 ATGTTTTTACGAAGATTTGCATGTTT 29748
Score = 93.3 bits (102), Expect = 3e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384
|| |||| || || || | ||| || ||||| || || || ||||| || ||||||||||
Sbjct 28825 GCATACCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATTT 28884
Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444
| ||| ||| |||| | || ||||| | ||| || || | |||| |||||||| |
Sbjct 28885 TGGCTTTCACATTTTCGATTGTATCAGAGGCTTCAACCTCTAAGGTGATTGTTTTGCCCG 28944
Query 101445 TTAAAGTTTTTACAAATATCTGCATG 101470
| || ||||| ||||| || ||||||
Sbjct 28945 TCAATGTTTTCACAAAAATTTGCATG 28970
Score = 86.0 bits (94), Expect = 5e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||||||||| || | || || ||||| || || ||||| || || |||||||||||
Sbjct 28518 TACCTGCAAAAATAAGGCGTTGCTGATCAGGAGGGATGCCCTCCTTGTCTTGAATTTTGG 28577
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
|||||| | || | ||| || || | ||| ||||| || || | |||||||| || |
Sbjct 28578 CCTTTACATTCTCGATAGTATCTGAGGCTTCTACTTCCAGTGTTATGGTTTTGCCAGTAA 28637
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
|| || || || ||||||||
Sbjct 28638 GTGTCTTGACGAAAATCTGCAT 28659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396154954324920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |