Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3028 131 1e-25 >seq3028 Length=62347 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || ||||| || || |||||||| ||||| |||| | ||| | || ||| Sbjct 28108 ACCAAGTGAAGCGTCGATTCCTTCTGAATATTATAATCCGATAACGTACGACCATCCTCC 28167 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| |||||||| |||||||||||||| || | |||| ||||||||||| Sbjct 28168 AGTTGCTTCCCGGCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACCCTCCTTGTCTTGG 28227 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || ||| ||| ||| | | | || || || ||||| |||| ||| || ||||| Sbjct 28228 ATTTTTGCTTTAACATTCTCGATCGTATCCGATGCTTCCACTTCCAACGTTATGGTTTTA 28287 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||||||||||||| || ||||| |||||| Sbjct 28288 CCCGTCAAAGTTTTCACGAAAATTTGCATC 28317 Score = 107 bits (118), Expect = 1e-18 Identities = 118/156 (76%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 48625 TACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTT 48684 |||| ||||| ||||| ||||||||||||| |||| || |||||||| |||||| Sbjct 29603 TACCAGCAAAAATCAGGCGCTGTTGATCCGGTGGAATACCTTCCTTGTCTTGTATCTTTG 29662 Query 48685 GTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCA 48744 ||| ||| | | | ||||| || ||||| || | |||||| ||||||||||||| Sbjct 29663 CTTTAACATTCTCAATCGTGTCTGAAGCTTCCACTTCTAGCGTAATTGTTTTTCCCGTCA 29722 Query 48745 AAGTTTTTACAAAAATCTGCATCGTGTGTACGTGTA 48780 | |||||||| || || ||||| || || |||| || Sbjct 29723 ATGTTTTTACGAAGATTTGCAT-GTTTGCACGTATA 29757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380818933175880