Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq156 205 6e-47 seq3028 105 4e-17 seq6683 100 2e-15 seq10840 95.1 8e-14 seq1352 91.5 1e-12 seq1448 89.7 3e-12 seq616 86.0 4e-11 >seq156 Length=140780 Score = 205 bits (226), Expect = 6e-47 Identities = 269/370 (73%), Gaps = 7/370 (2%) Strand=Plus/Plus Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 |||| ||||| ||| |||||||||||||||| ||||||||| | || || || ||| Sbjct 84432 ATTTCAGATGCGAAACGATTGATTGGTCGTAAGTTTGATGATGGGTCAGTACAGTCAGAT 84491 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGT---AAACCATATATAGAAGC- 474627 ||| || ||||| || || || || |||| ||||||| |||||| | | ||| Sbjct 84492 ATGAAACACTGGCCATTCAAAGTCATGAATGCTGGTGGTGGTAAACCAAAAGTGCAAGTT 84551 Query 474628 -AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 |||||| | || ||||| ||| || |||| ||| ||||||| || |||||||| | Sbjct 84552 GAATACAAG--GGCGAAACGAAAACCTTCACACCAGAAGAAATTTCATCGATGGTTTTGG 84609 Query 474687 CCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTA 474746 || ||||| |||| || ||| ||| || || | || | ||||| ||||| | Sbjct 84610 TTAAGATGAAGGAAACAGCTGAAGCATTTCTCGGTCATGCGGTCAAAGATGCTGTAATCA 84669 Query 474747 CTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTG 474806 | || || ||||||||||| || || ||||| || ||||| |||||| | || ||||| Sbjct 84670 CAGTCCCCGCATATTTTAACGACTCACAACGACAGGCAACGAAAGATTCTGGTGCAATTG 84729 Query 474807 CAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTC 474866 | ||| | ||||| | |||||||| || |||||||| ||||| || ||||||||||| Sbjct 84730 CTGGTTTGAATGTCCTGCGTATTATCAACGAACCAACTGCAGCTGCTATTGCTTATGGTT 84789 Query 474867 TTGATAAGAA 474876 | || || || Sbjct 84790 TGGACAAAAA 84799 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || ||||| |||||||| | || || || ||||||||||||||||| ||||||||||| Sbjct 86165 GGAATTCCACCTGCTCCTCGTGGCGTGCCGCAAATTGAAGTTACTTTCGATATTGATGCG 86224 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACT 476209 || |||||||| |||||| | ||| || ||||| | ||| || || || ||| Sbjct 86225 AACGGTATTCTGAATGTTTCCGCTCAAGACAAATCGACAGGAAAGCAGAATAAGATTACT 86284 Query 476210 ATTACAAA 476217 ||||| || Sbjct 86285 ATTACCAA 86292 >seq3028 Length=62347 Score = 105 bits (116), Expect = 4e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || | ||||| || ||| || || ||||||||| | || || Sbjct 28095 ACGAAGACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGAATATTATAATCCGATAACGT 28154 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || |||||||| || ||||| || || || ||||| || || ||||| || Sbjct 28155 ACGACCATCCTCCAGTTGCTTCCCGGCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACC 28214 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||| || ||| ||| ||| || || ||||| | || | | || ||| Sbjct 28215 CTCCTTGTCTTGGATTTTTGCTTTAACATTCTCGATCGTATCCGATGCTTCCACTTCCAA 28274 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||| || | ||| || ||||||||||| Sbjct 28275 -CGTTATGGTTTTACCCGTCAAAGTTTTCACGAAAATTTG 28313 Score = 95.1 bits (104), Expect = 8e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||| |||||||||||||| ||||| || || |||||||||||||||||||| || | Sbjct 28830 CCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCT 28889 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| ||| || ||||||| | | | || | ||| || ||||| || || | Sbjct 28890 TTCACATTTTCGATTGTATCAGAGGCTTCAACCTCTAAGGTGATTGTTTTGCCCGTCAAT 28949 Query 480753 GTCTTAACGAAAATTTG 480769 || || || |||||||| Sbjct 28950 GTTTTCACAAAAATTTG 28966 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || ||||||||||| ||||| ||||||||||| || || |||||||||||||| || Sbjct 28520 CCTGCAAAAATAAGGCGTTGCTGATCAGGAGGGATGCCCTCCTTGTCTTGAATTTTGGCC 28579 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| || |||||||| | | | ||| || || || ||||| || || || Sbjct 28580 TTTACATTCTCGATAGTATCTGAGGCTTCTACTTCCAGTGTTATGGTTTTGCCAGTAAGT 28639 Query 480753 GTCTTAACGAAAATTTG 480769 ||||| |||||||| || Sbjct 28640 GTCTTGACGAAAATCTG 28656 Score = 86.0 bits (94), Expect = 4e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| || || |||||||| || ||||| |||||||||||||| |||||| | Sbjct 29605 CCAGCAAAAATCAGGCGCTGTTGATCCGGTGGAATACCTTCCTTGTCTTGTATCTTTGCT 29664 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| ||||| || || | | ||| || ||||| ||||| || || | Sbjct 29665 TTAACATTCTCAATCGTGTCTGAAGCTTCCACTTCTAGCGTAATTGTTTTTCCCGTCAAT 29724 Query 480753 GTCTTAACGAAAATTTG 480769 || || ||||| ||||| Sbjct 29725 GTTTTTACGAAGATTTG 29741 >seq6683 Length=4209 Score = 100 bits (110), Expect = 2e-15 Identities = 110/145 (76%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 474733 TGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGA 474792 |||| | || || || || ||||| ||||||||||| |||||||| |||||||| || || Sbjct 1340 TGATACTGTTATCACAGTGCCAGCTTATTTTAATGACTCTCAACGCCAAGCAACAAAGGA 1399 Query 474793 TGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTAT-TATTAATGAACCAACAGCAGCCG 474851 ||| || | |||||| | | ||||| || | || ||||||| || || | || | Sbjct 1400 TGCAGGGAAAATTGCTGAGTTAAATGTACTAAGGATAGGTTAATGAGCCTACTGTTGCAG 1459 Query 474852 CACTTGCTTATGGTCTTGATAAGAA 474876 | ||||||||| || |||||||||| Sbjct 1460 CGCTTGCTTATAGTTTTGATAAGAA 1484 >seq10840 Length=643 Score = 95.1 bits (104), Expect = 8e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 480630 TTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTT 480689 || || || |||||||| |||||||||||||| ||||| || ||||| |||||||| || Sbjct 143 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGTGGAATGCCCTCCTTATCTTGAATTTTA 84 Query 480690 TGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTG 480749 ||| ||| ||||| ||||||| | ||||| ||||| |||||||| || Sbjct 83 GCTTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGAGTAATCGTTTTACCAGTT 24 Query 480750 AGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| Sbjct 23 AGTGTTTTCACGAATATTTG 4 >seq1352 Length=23028 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 321758 CGTAACAATTTCATCAAATGTAAGATTTTTTGCAATAATTAATGGTAAACCAACTTCATT 321817 |||||||||||| ||||| | ||||| ||||||| | || | |||||| || Sbjct 4685 CGTAACAATTTCTGGGAATGTCATATTTTGTGCAATAGTGCGAGGCACGCCAACTGTATC 4626 Query 321818 CAGTGCAATATTTGGATCAGATGTGATAACTGTACGACCAGACATATCAACACGTTTACC 321877 | | | ||||||||| | ||| || || || ||| | || | ||| || ||||| || Sbjct 4625 TATGGGCAGATTTGGATCTGGTGTAATTACGGTTCGAGCCGAGAAATCCACTCGTTTGCC 4566 Query 321878 CATAAGATTTCCTCTAATACGACCTTCTTTTCC 321910 ||| | |||||||||||| || ||||||||||| Sbjct 4565 CATTAAATTTCCTCTAATTCGGCCTTCTTTTCC 4533 >seq1448 Length=39285 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || |||||||| | ||||| ||||| ||||| || |||||||| || |||||||| | Sbjct 34872 CCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATCCTGAATCTTCGCT 34813 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||||||||| | | | |||||| ||||| || ||||| || | Sbjct 34812 TTTACATTTTCAATAGTATCCGAGGATTCGACTTCAAGCGTAATCGTCTTACCAGTTAAT 34753 Query 480753 GTCTTAACGAAAATTTG 480769 || || || |||||||| Sbjct 34752 GTTTTTACAAAAATTTG 34736 >seq616 Length=68005 Score = 86.0 bits (94), Expect = 4e-11 Identities = 124/171 (73%), Gaps = 8/171 (5%) Strand=Plus/Plus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGA-AGGTATTCCTCCTGCTCCCAG 476109 || |||||||| ||| || || | ||| || |||| |||||| || || || ||| | Sbjct 33275 ACGAAAGATAACCACATCCTGGGTAAATTTGAT-TTGACAGGTATCCCACCAGCACCCCG 33333 Query 476110 AGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTAC 476169 ||| || || ||||| |||||||||||||| || |||| ||||| ||||| | || || Sbjct 33334 AGGTGTACCGCAAATCGAAGTTACTTTTGAAATCGATGTGAATGGCATTCTGCACGTCAC 33393 Query 476170 TGCTTGTGATAAATCTA---GTAACAAGAGTAAAAATATAACTATTACAAA 476217 || |||||| || | ||||||| |||| || || |||||||| Sbjct 33394 GGCAGAGGATAAAGGTACAGGAAACAAGAATAAA---ATTACGATTACAAA 33441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267082807582880