Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq156 154 2e-32 seq616 152 7e-32 seq3028 143 4e-29 seq10840 141 1e-28 seq1448 118 1e-21 >seq156 Length=140780 Score = 154 bits (170), Expect = 2e-32 Identities = 187/252 (74%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658 ||||||| | || || | |||| || | || ||||||||||| || ||||| ||| Sbjct 84549 GTTGAATACAAGGGCGAAACGAAAACCTTCACACCAGAAGAAATTTCATCGATGGTTTTG 84608 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 ||||||||||||| || || ||| | || | ||| | | || |||||||| || | Sbjct 84609 GTTAAGATGAAGGAAACAGCTGAAGCATTTCTCGGTCATGCGGTCAAAGATGCTGTAATC 84668 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || || || || || || | || |||||||||||||| || || || ||| ||| ||| Sbjct 84669 ACAGTCCCCGCATATTTTAACGACTCACAACGACAGGCAACGAAAGATTCTGGTGCAATT 84728 Query 195779 GCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 || ||| | || ||| || | |||||||| |||||||| || ||||| ||||||||||| Sbjct 84729 GCTGGTTTGAA-TGTCCTGCGTATTATCAACGAACCAACTGCAGCTGCTATTGCTTATGG 84787 Query 195838 TCTGGACAAGAA 195849 | ||||||| || Sbjct 84788 TTTGGACAAAAA 84799 Score = 132 bits (146), Expect = 6e-26 Identities = 183/256 (71%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192 || |||||||||||||| || ||||||||||| ||||| | ||||| ||||| |||||| Sbjct 85392 GAAATTGATTCGTTGTTCGAGGGAATTGACTTTTATACCAACATTACGCGTGCTCGTTTT 85451 Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252 ||||| | ||||| | || | ||||| || ||||| ||| ||| || Sbjct 85452 GAAGAACTTTGTGCTGATCTCTTCCGTTCAACCATGGATCCGGTTGAGAAAGCACTGCGA 85511 Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 ||||| ||||||||||| | | || |||| ||||| | || || ||||| |||||| Sbjct 85512 GACGCTAAGATGGATAAAGCCCAAGTGCATGATATTGTATTAGTAGGTGGATCGACCCGT 85571 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372 ||||| || | ||| || ||||||| ||||| | ||||| | || |||| Sbjct 85572 ATTCCAAAAGTGCAAAAGCTGCTTTCAGATTTCTTTTCTGGCAAAGAACTCAATAAAAGC 85631 Query 196373 ATCAACCCGGATGAAG 196388 ||||| || ||||||| Sbjct 85632 ATCAATCCAGATGAAG 85647 Score = 118 bits (130), Expect = 1e-21 Identities = 190/268 (71%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 196610 GTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTT 196668 || || ||||| ||||| | | || ||||||| || || | ||||||| ||||| || Sbjct 86102 GTTTACGAAGGTGAACG-TGCTATGACAAAGGACAATAATTTGCTTGGAAAATTCGAATT 86160 Query 196669 GACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGA 196728 | || |||||| |||| || | || || || || ||| | ||| |||||||| || Sbjct 86161 ATCTGGAATTCCACCTGCTCCTCGTGGCGTGCCGCAAATTGAAGTTACTTTCGATATTGA 86220 Query 196729 CGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAA-AAGA 196787 || || || ||||| || || | ||| | ||||| | | || ||| | ||| |||| Sbjct 86221 TGCGAACGGTATTCTGAATGTTTCCGCTCAAGACAAATCGACAGG-AAAGCAGAATAAGA 86279 Query 196788 TTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAG 196847 || ||||||||||| ||||| || | || ||||| || ||||| || ||||| || | Sbjct 86280 TTACTATTACCAATGATAAGGGACGTTTGTCAAAGGATGAGATTGAGCGAATGGTGCAGG 86339 Query 196848 ATGCGGAAAAGTACAGGGAAGAAGACGA 196875 | || ||||| || | || ||| || || Sbjct 86340 AAGCTGAAAAATATAAGGCAGATGATGA 86367 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 196388 GCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAAC 196447 || || || |||||||| || || ||||| |||||||| || |||| | | | Sbjct 85789 GCCGTGGCATATGGTGCAGCAGTACAGGCAGCTATTCTTTCTGGTGATAAGTCGGAAGCT 85848 Query 196448 GTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGT 196507 ||||| ||| | | ||||| || || ||||| | || || ||| |||||||||| || Sbjct 85849 GTCCAGGATTTATTACTACTCGACGTCGCACCACTTTCACTTGGTATTGAAACAGCTGGA 85908 Query 196508 GGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTC 196567 |||||||||||| |||| | |||| || ||||| ||||| || | || Sbjct 85909 GGTGTTATGACTGCTCTTATCAAGCGGAATACTACTATCCCGACGAAAACATCTCAGACA 85968 Query 196568 TTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGT 196611 ||| | || || || || |||||||| ||||||| ||||| || Sbjct 85969 TTTACCACATACTCTGACAATCAACCTGGTGTTCTCATTCAGGT 86012 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 195382 AGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGA 195441 ||| || || ||||| || || || || || ||||| |||| ||||||||| |||| || Sbjct 84106 AGGTAATCGAACAACACCGTCATATGTGGCGTTTACCGATACTGAACGTCTTATTGGTGA 84165 Query 195442 TGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTG 195488 ||| |||||||||||| || ||||| || ||||||||| |||| Sbjct 84166 TGCGGCAAAAAATCAGGTTGCAATGAATCCACACAATACTGTTTTTG 84212 >seq616 Length=68005 Score = 152 bits (168), Expect = 7e-32 Identities = 175/234 (75%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 195616 GAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGAC 195675 ||| |||| || ||||| || |||||||| | ||||| | ||| |||||||| | Sbjct 31480 GAAAAAACC-TTCGCTCCTGAGGAAATTTCAGCAATGGTTCTCGGTAAAATGAAGGAAAT 31538 Query 195676 TGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTT 195735 ||| ||| | | | |||| ||| || ||| |||||||||| || || || |||||||| Sbjct 31539 TGCAGAAGCATACTTGGGAAAAGAAGTAAAACATGCAGTTGTTACAGTGCCCGCTTACTT 31598 Query 195736 CAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCT 195795 | |||| |||||||||| || || || || || | | ||||||| ||||| || | | Sbjct 31599 TAATGATGCACAACGACAAGCTACCAAAGATGCAGGTACTATTGCCGGTCTCAATGTTGT 31658 Query 195796 TAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 | | || ||||||||||| ||||| ||||| || |||||||| ||||| || || Sbjct 31659 TCGTATCATCAATGAACCTACAGCTGCTGCTATCGCTTATGGGCTGGATAAAAA 31712 >seq3028 Length=62347 Score = 143 bits (158), Expect = 4e-29 Identities = 117/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||||||||| | || || ||||| |||||| | |||||||| | || Sbjct 28969 ATGCAAATTTTTGTGAAAACATTGACGGGCAAAACAATCACCTTAGAGGTTGAAGCCTCT 28910 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || |||||||| || | |||||||| |||||||| |||||||| || ||||| |||||| Sbjct 28909 GATACAATCGAAAATGTGAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAG 28850 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| |||||||| ||||||| Sbjct 28849 CAACGTCTTATTTTCGCTGGTA 28828 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||| ||||||||||| ||||| || || || ||||| | || || || Sbjct 29374 GTGGTATGCAAATTTTTGTGAAAACTCTTACCGGTAAGACAATCACATTGGAAGTGGAAG 29315 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| || | ||||| || || || || || |||||||||||||| | Sbjct 29314 CATCTGACACCATCGAGAATGTTAAAGCGAAAATCCAGGACAAAGAAGGCATTCCACCAG 29255 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAA 172004 |||||||||| | ||||| |||||||| Sbjct 29254 ATCAGCAACGGTTGATTTTCGCTGGTAA 29227 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || ||||| | || |||||||| || || || || || || | ||| Sbjct 29744 ATGCAAATCTTCGTAAAAACATTGACGGGAAAAACAATTACGCTAGAAGTGGAAGCTTCA 29685 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | ||||| ||||| ||||| |||||||| |||||||| ||||| Sbjct 29684 GACACGATTGAGAATGTTAAAGCAAAGATACAAGACAAGGAAGGTATTCCACCGGATCAA 29625 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || || ||||||||||||| Sbjct 29624 CAGCGCCTGATTTTTGCTGGTA 29603 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || || |||||||| ||||| || || || || || || | ||| Sbjct 28659 ATGCAGATTTTCGTCAAGACACTTACTGGCAAAACCATAACACTGGAAGTAGAAGCCTCA 28600 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || ||||| |||||||| ||||| ||||| || || |||||| Sbjct 28599 GATACTATCGAGAATGTAAAGGCCAAAATTCAAGACAAGGAGGGCATCCCTCCTGATCAG 28540 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| ||||||||||| |||| Sbjct 28539 CAACGCCTTATTTTTGCAGGTA 28518 >seq10840 Length=643 Score = 141 bits (156), Expect = 1e-28 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || |||||||| || ||||| ||||| || || || ||||| || ||||| Sbjct 1 ATGCAAATATTCGTGAAAACACTAACTGGTAAAACGATTACTCTTGAGGTAGAATCGTCT 60 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | ||||| || |||||||||||||| ||||||||||| ||||| Sbjct 61 GATACCATTGAGAATGTGAAAGCTAAAATTCAAGATAAGGAGGGCATTCCACCTGATCAA 120 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 |||||||||||||| || ||||| Sbjct 121 CAACGACTTATTTTCGCAGGTAA 143 >seq1448 Length=39285 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 ||||||||| ||||| ||||| | ||||| || || || || || || || || || || Sbjct 34732 TATGCAAATTTTTGTAAAAACATTAACTGGTAAGACGATTACGCTTGAAGTCGAATCCTC 34791 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 || || || || || | ||||| |||||||| |||||||||||||| || || ||||| Sbjct 34792 GGATACTATTGAAAATGTAAAAGCGAAGATTCAGGATAAGGAAGGCATACCTCCAGATCA 34851 Query 171981 GCAACGACTTATTTTTGCTGGTA 172003 ||||||| | |||||||| |||| Sbjct 34852 GCAACGATTGATTTTTGCAGGTA 34874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657652212963200