Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_021190.1
Length=46150
Score E
Sequences producing significant alignments: (Bits) Value
seq20922 298 2e-76
seq21498 132 1e-26
seq22751 107 6e-19
>seq20922
Length=439
Score = 298 bits (330), Expect = 2e-76
Identities = 321/425 (76%), Gaps = 0/425 (0%)
Strand=Plus/Minus
Query 4882 TGGGCGCTGGCCAATGACATGAACTGCAGTGCAGGTCAGCTTATTGCCAGTTCGGCATCG 4941
|||||||| ||||| |||||||||||||||||||||||| | |||||||| | || ||
Sbjct 437 TGGGCGCTTGCCAACGACATGAACTGCAGTGCAGGTCAGTTGCTTGCCAGTGCCGCCTCC 378
Query 4942 CGACGGCTGGTCACACAAACGGCCAGAACCGGCTCCATTGGGGTCATGATGGCGCACAGT 5001
|| || |||||||| || || ||| | || |||||||| || ||||||||||| ||||||
Sbjct 377 CGGCGTCTGGTCACGCAGACCGCCCGGACAGGCTCCATCGGCGTCATGATGGCTCACAGT 318
Query 5002 AACTATGGCGCTGCGCTCAAAACTAACGGCGTTGAGGTCACGCTGATTTACAGCGGCGAT 5061
|| || || |||||||| | | | || || || ||||||||||||||||||||
Sbjct 317 AATTACGGTGCTGCGCTGGAGAAACAGGGTGTGGAAATCACGCTGATTTACAGCGGCAGC 258
Query 5062 CGCAAGGTCGACGGCAACCCTTACGAAAAGCTTCCGAAAGATGTGCGTGCTGATTTCCAG 5121
| ||||| || |||||||| ||| | |||||| | || || || | | |||
Sbjct 257 CATAAGGTGGATGGCAACCCCTACAGCCATCTTCCGGATGACGTCCGGGAGACACTGCAG 198
Query 5122 ACGCGTATCGATGCCACTCGTCAGATGTTTGCCGAAAAGGTTTCCGCTTATACCGGCATG 5181
| || || || || || || ||||||||||| | ||||| || || ||||||||| ||
Sbjct 197 TCCCGGATGGACGCAACCCGCCAGATGTTTGCGCAGAAGGTGTCGGCATATACCGGCCTG 138
Query 5182 TCTGTTCAGGACGTGCTGGACACCGAAGCGGCAGTATTCTCCGGCCAGGAATCTTTGGAT 5241
|| || |||| |||||||| ||||| || ||||| | | ||| ||||| | | |||
Sbjct 137 TCCGTGCAGGTTGTGCTGGATACCGAGGCTGCAGTGTACAGCGGTCAGGAGGCCATTGAT 78
Query 5242 AACGGGCTGGCGGATGAACTTGTTAACAATACCGATGCGCTCGGCGTGATGCGCGAAGCA 5301
||| ||||| |||||||||||||||| ||||||||| || ||| ||||| || |||
Sbjct 77 GCCGGACTGGCTGATGAACTTGTTAACAGCACCGATGCGATCACCGTCATGCGTGATGCA 18
Query 5302 CTCGA 5306
|| ||
Sbjct 17 CTGGA 13
>seq21498
Length=399
Score = 132 bits (146), Expect = 1e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 12512 CTTCAGGCCCAGCTTAAAACGCTCGAGCAGCATACCAGCGTAAACGACGTCATAAGCAAA 12571
|||||||| | || ||||| ||| ||||| || | | ||| || || ||| |
Sbjct 1 CTTCAGGCAGAACTCCGGACGCTGGAGAAGCATGCCGGAGCAAATGAGAAAATCAGCCAG 60
Query 12572 CAGCGTCAGGATCTCTGGCAGACTGAAAATCAGTTCACCGTTCTGCAGGAGGCCGCTGGG 12631
||||| | |||| | ||| || | || | ||||||| | || ||| ||||||| ||
Sbjct 61 CAGCGCCGGGATTTGTGGAAGGCGGAGAGTCAGTTCGCGGTACTGGAGGAGGCGGCGCAA 120
Query 12632 CGTCGTCAGCTTACGGCGCAGGAAAAATCCCTGCTGGCGCACAAGGAAGAAACGCTCGAG 12691
||||| ||||| | || ||||| ||||||||||||||||| || || || ||||| |||
Sbjct 121 CGTCGCCAGCTGTCTGCACAGGAGAAATCCCTGCTGGCGCATAAAGATGAGACGCTGGAG 180
Query 12692 TACAAGCGGCAGCTGGCCGACCTGGGCGATAAGGTT 12727
||||| || |||||||| | || ||||| ||||||
Sbjct 181 TACAAACGCCAGCTGGCTGCACTTGGCGACAAGGTT 216
>seq22751
Length=317
Score = 107 bits (118), Expect = 6e-19
Identities = 92/114 (81%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 1510 CTCCAGCGTCTTTTACCTGTGTGAACATAATGCCTGCGTCATTAAGCAGCAGGAGCTGGA 1569
|||||||| ||||| | || || ||||||||||||||||| ||||||||||||||
Sbjct 132 CTCCAGCGCTTTTTAACACTGCGAGCATAATGCCTGCGTCATCCGCCAGCAGGAGCTGGA 73
Query 1570 TTTCACTGAAGCTCGTTACATCTGCGACACCACCGGGATCTGGACGCGCGACGG 1623
|| ||||| || ||||| |||||||| | |||||||||||||| || || ||
Sbjct 72 CTTTACTGATGCCCGTTATATCTGCGAAAAGACCGGGATCTGGACCCGTGATGG 19
Score = 100 bits (110), Expect = 8e-17
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 28222 GGGAGGTGAAAGGGCATTTAAGCTCAAGGCCGAACCCGTTACTGCACAGGCCGTCAGGGG 28281
||||||| || ||| |||| || ||||||||| |||| |||||| | || || || |
Sbjct 141 GGGAGGTAAACGGGTATTTCAGTTCAAGGCCGTTGCCGTCACTGCATAAACCATCGGGAG 200
Query 28282 AGCAGGCGGTGCGCATGCTCTCGTCACGGAACAAGATCGGAGACTCCGTGACTTTCACGT 28341
|||||||||| ||||| || ||||| || | | |||||| || || || || ||||||
Sbjct 201 AGCAGGCGGTACGCATACTTTCGTCGCGATAGATGATCGGGGATTCAGTAACATTCACGC 260
Query 28342 CAGTGGTGAACTCGAAGAGGGTGCGGGC 28369
| | ||||| || || ||||| | |||
Sbjct 261 CGGAAGTGAATTCAAACAGGGTTCTGGC 288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147513612336640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |