Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq20922 298 2e-76 seq21498 132 1e-26 seq22751 107 6e-19 >seq20922 Length=439 Score = 298 bits (330), Expect = 2e-76 Identities = 321/425 (76%), Gaps = 0/425 (0%) Strand=Plus/Minus Query 4882 TGGGCGCTGGCCAATGACATGAACTGCAGTGCAGGTCAGCTTATTGCCAGTTCGGCATCG 4941 |||||||| ||||| |||||||||||||||||||||||| | |||||||| | || || Sbjct 437 TGGGCGCTTGCCAACGACATGAACTGCAGTGCAGGTCAGTTGCTTGCCAGTGCCGCCTCC 378 Query 4942 CGACGGCTGGTCACACAAACGGCCAGAACCGGCTCCATTGGGGTCATGATGGCGCACAGT 5001 || || |||||||| || || ||| | || |||||||| || ||||||||||| |||||| Sbjct 377 CGGCGTCTGGTCACGCAGACCGCCCGGACAGGCTCCATCGGCGTCATGATGGCTCACAGT 318 Query 5002 AACTATGGCGCTGCGCTCAAAACTAACGGCGTTGAGGTCACGCTGATTTACAGCGGCGAT 5061 || || || |||||||| | | | || || || |||||||||||||||||||| Sbjct 317 AATTACGGTGCTGCGCTGGAGAAACAGGGTGTGGAAATCACGCTGATTTACAGCGGCAGC 258 Query 5062 CGCAAGGTCGACGGCAACCCTTACGAAAAGCTTCCGAAAGATGTGCGTGCTGATTTCCAG 5121 | ||||| || |||||||| ||| | |||||| | || || || | | ||| Sbjct 257 CATAAGGTGGATGGCAACCCCTACAGCCATCTTCCGGATGACGTCCGGGAGACACTGCAG 198 Query 5122 ACGCGTATCGATGCCACTCGTCAGATGTTTGCCGAAAAGGTTTCCGCTTATACCGGCATG 5181 | || || || || || || ||||||||||| | ||||| || || ||||||||| || Sbjct 197 TCCCGGATGGACGCAACCCGCCAGATGTTTGCGCAGAAGGTGTCGGCATATACCGGCCTG 138 Query 5182 TCTGTTCAGGACGTGCTGGACACCGAAGCGGCAGTATTCTCCGGCCAGGAATCTTTGGAT 5241 || || |||| |||||||| ||||| || ||||| | | ||| ||||| | | ||| Sbjct 137 TCCGTGCAGGTTGTGCTGGATACCGAGGCTGCAGTGTACAGCGGTCAGGAGGCCATTGAT 78 Query 5242 AACGGGCTGGCGGATGAACTTGTTAACAATACCGATGCGCTCGGCGTGATGCGCGAAGCA 5301 ||| ||||| |||||||||||||||| ||||||||| || ||| ||||| || ||| Sbjct 77 GCCGGACTGGCTGATGAACTTGTTAACAGCACCGATGCGATCACCGTCATGCGTGATGCA 18 Query 5302 CTCGA 5306 || || Sbjct 17 CTGGA 13 >seq21498 Length=399 Score = 132 bits (146), Expect = 1e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 12512 CTTCAGGCCCAGCTTAAAACGCTCGAGCAGCATACCAGCGTAAACGACGTCATAAGCAAA 12571 |||||||| | || ||||| ||| ||||| || | | ||| || || ||| | Sbjct 1 CTTCAGGCAGAACTCCGGACGCTGGAGAAGCATGCCGGAGCAAATGAGAAAATCAGCCAG 60 Query 12572 CAGCGTCAGGATCTCTGGCAGACTGAAAATCAGTTCACCGTTCTGCAGGAGGCCGCTGGG 12631 ||||| | |||| | ||| || | || | ||||||| | || ||| ||||||| || Sbjct 61 CAGCGCCGGGATTTGTGGAAGGCGGAGAGTCAGTTCGCGGTACTGGAGGAGGCGGCGCAA 120 Query 12632 CGTCGTCAGCTTACGGCGCAGGAAAAATCCCTGCTGGCGCACAAGGAAGAAACGCTCGAG 12691 ||||| ||||| | || ||||| ||||||||||||||||| || || || ||||| ||| Sbjct 121 CGTCGCCAGCTGTCTGCACAGGAGAAATCCCTGCTGGCGCATAAAGATGAGACGCTGGAG 180 Query 12692 TACAAGCGGCAGCTGGCCGACCTGGGCGATAAGGTT 12727 ||||| || |||||||| | || ||||| |||||| Sbjct 181 TACAAACGCCAGCTGGCTGCACTTGGCGACAAGGTT 216 >seq22751 Length=317 Score = 107 bits (118), Expect = 6e-19 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 1510 CTCCAGCGTCTTTTACCTGTGTGAACATAATGCCTGCGTCATTAAGCAGCAGGAGCTGGA 1569 |||||||| ||||| | || || ||||||||||||||||| |||||||||||||| Sbjct 132 CTCCAGCGCTTTTTAACACTGCGAGCATAATGCCTGCGTCATCCGCCAGCAGGAGCTGGA 73 Query 1570 TTTCACTGAAGCTCGTTACATCTGCGACACCACCGGGATCTGGACGCGCGACGG 1623 || ||||| || ||||| |||||||| | |||||||||||||| || || || Sbjct 72 CTTTACTGATGCCCGTTATATCTGCGAAAAGACCGGGATCTGGACCCGTGATGG 19 Score = 100 bits (110), Expect = 8e-17 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 28222 GGGAGGTGAAAGGGCATTTAAGCTCAAGGCCGAACCCGTTACTGCACAGGCCGTCAGGGG 28281 ||||||| || ||| |||| || ||||||||| |||| |||||| | || || || | Sbjct 141 GGGAGGTAAACGGGTATTTCAGTTCAAGGCCGTTGCCGTCACTGCATAAACCATCGGGAG 200 Query 28282 AGCAGGCGGTGCGCATGCTCTCGTCACGGAACAAGATCGGAGACTCCGTGACTTTCACGT 28341 |||||||||| ||||| || ||||| || | | |||||| || || || || |||||| Sbjct 201 AGCAGGCGGTACGCATACTTTCGTCGCGATAGATGATCGGGGATTCAGTAACATTCACGC 260 Query 28342 CAGTGGTGAACTCGAAGAGGGTGCGGGC 28369 | | ||||| || || ||||| | ||| Sbjct 261 CGGAAGTGAATTCAAACAGGGTTCTGGC 288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147513612336640