Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1448 122 2e-22 seq10840 109 1e-18 seq3028 86.0 1e-11 >seq1448 Length=39285 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| |||| || ||||| |||||||| ||||| ||||| || || || | | Sbjct 34872 CCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATCCTGAATCTTCGCT 34813 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| |||| ||||||||| || || || ||||| || || || || ||||| |||| Sbjct 34812 TTTACATTTTCAATAGTATCCGAGGATTCGACTTCAAGCGTAATCGTCTTACCAGTTAAT 34753 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||||||||| |||||||| Sbjct 34752 GTTTTTACAAAAATTTGCAT 34733 >seq10840 Length=643 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || || ||||| | || ||||||||||| || || || || |||||||| ||||| Sbjct 143 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGTGGAATGCCCTCCTTATCTTGAATTTTA 84 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | ||| | ||| ||| ||||| || || || || || ||||| || |||||||| ||| Sbjct 83 GCTTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGAGTAATCGTTTTACCAGTT 24 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 || ||||| || ||||||||||| Sbjct 23 AGTGTTTTCACGAATATTTGCAT 1 >seq3028 Length=62347 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | | || ||||||||||| || || || || ||||| ||||||| Sbjct 28520 CCTGCAAAAATAAGGCGTTGCTGATCAGGAGGGATGCCCTCCTTGTCTTGAATTTTGGCC 28579 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| ||| |||||||| || | || ||||| || ||||| ||||| || || || Sbjct 28580 TTTACATTCTCGATAGTATCTGAGGCTTCTACTTCCAGTGTTATGGTTTTGCCAGTAAGT 28639 Query 193341 GTTTTTACAAATATTTGCAT 193360 || || || || || ||||| Sbjct 28640 GTCTTGACGAAAATCTGCAT 28659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899366960419200