Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq1448 122 2e-22
seq10840 109 1e-18
seq3028 86.0 1e-11
>seq1448
Length=39285
Score = 122 bits (134), Expect = 2e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| |||| || ||||| |||||||| ||||| ||||| || || || | |
Sbjct 34872 CCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATCCTGAATCTTCGCT 34813
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|||| |||| ||||||||| || || || ||||| || || || || ||||| ||||
Sbjct 34812 TTTACATTTTCAATAGTATCCGAGGATTCGACTTCAAGCGTAATCGTCTTACCAGTTAAT 34753
Query 193341 GTTTTTACAAATATTTGCAT 193360
||||||||||| ||||||||
Sbjct 34752 GTTTTTACAAAAATTTGCAT 34733
>seq10840
Length=643
Score = 109 bits (120), Expect = 1e-18
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277
|| || || ||||| | || ||||||||||| || || || || |||||||| |||||
Sbjct 143 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGTGGAATGCCCTCCTTATCTTGAATTTTA 84
Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337
| ||| | ||| ||| ||||| || || || || || ||||| || |||||||| |||
Sbjct 83 GCTTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGAGTAATCGTTTTACCAGTT 24
Query 193338 AGCGTTTTTACAAATATTTGCAT 193360
|| ||||| || |||||||||||
Sbjct 23 AGTGTTTTCACGAATATTTGCAT 1
>seq3028
Length=62347
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| | | || ||||||||||| || || || || ||||| |||||||
Sbjct 28520 CCTGCAAAAATAAGGCGTTGCTGATCAGGAGGGATGCCCTCCTTGTCTTGAATTTTGGCC 28579
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|||| ||| |||||||| || | || ||||| || ||||| ||||| || || ||
Sbjct 28580 TTTACATTCTCGATAGTATCTGAGGCTTCTACTTCCAGTGTTATGGTTTTGCCAGTAAGT 28639
Query 193341 GTTTTTACAAATATTTGCAT 193360
|| || || || || |||||
Sbjct 28640 GTCTTGACGAAAATCTGCAT 28659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899366960419200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |