Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1448 118 2e-21 seq3028 111 2e-19 seq10840 96.9 5e-15 >seq1448 Length=39285 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| ||| | |||||||| ||||| || || ||||| | ||||||||| Sbjct 34730 AATATGCAAATTTTTGTAAAAACATTAACTGGTAAGACGATTACGCTTGAAGTCGAATCC 34789 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| |||| ||| || ||| || || || ||||| ||||||||||||||||| Sbjct 34790 TCGGATACTATTGAAAATGTAAAAGCGAAGATTCAGGATAAGGAAGGCATACCTCCAGAT 34849 Query 155940 CAACAAAGATTGATTTATGCCGGTA 155964 || ||| ||||||||| ||| |||| Sbjct 34850 CAGCAACGATTGATTTTTGCAGGTA 34874 >seq3028 Length=62347 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| || ||||| || || || ||||| |||| || Sbjct 28316 ATGCAAATTTTCGTGAAAACTTTGACGGGTAAAACCATAACGTTGGAAGTGGAAGCATCG 28257 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || ||| ||||| ||||| || || || || || ||||| ||| Sbjct 28256 GATACGATCGAGAATGTTAAAGCAAAAATCCAAGACAAGGAGGGTATTCCACCAGACCAA 28197 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | |||||| ||||| || || ||| | || ||||| ||||||||| Sbjct 28196 CAGCGACTGATCTTTGCCGGGAAGCAACTGGAGGATGGTCGTACGTTATCGGATTATAAT 28137 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || || |||||||||| || || Sbjct 28136 ATTCAGAAGGAATCGACGCTTCACTTGGT 28108 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||||||||| || ||||| || || ||||| || |||| ||| Sbjct 28969 ATGCAAATTTTTGTGAAAACATTGACGGGCAAAACAATCACCTTAGAGGTTGAAGCCTCT 28910 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| |||||| ||||| ||||| || ||||| || || ||||| || Sbjct 28909 GATACAATCGAAAATGTGAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAG 28850 Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967 ||| | | |||| || |||| || Sbjct 28849 CAACGTCTTATTTTCGCTGGTATGC 28825 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | ||||||||||| |||||||| ||||| ||||||| |||| | Sbjct 29747 AACATGCAAATCTTCGTAAAAACATTGACGGGAAAAACAATTACGCTAGAAGTGGAAGCT 29688 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| || || ||| || |||||||| || ||||| || || || || Sbjct 29687 TCAGACACGATTGAGAATGTTAAAGCAAAGATACAAGACAAGGAAGGTATTCCACCGGAT 29628 Query 155940 CAACAAAGATTGATTTATGCCGGTA 155964 ||||| | |||||| ||| |||| Sbjct 29627 CAACAGCGCCTGATTTTTGCTGGTA 29603 >seq10840 Length=643 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | |||||| | ||||| ||||| ||||| | || || ||| ||| Sbjct 1 ATGCAAATATTCGTGAAAACACTAACTGGTAAAACGATTACTCTTGAGGTAGAATCGTCT 60 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| |||||| |||||||| || ||||| || || || ||| Sbjct 61 GATACCATTGAGAATGTGAAAGCTAAAATTCAAGATAAGGAGGGCATTCCACCTGATCAA 120 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 ||| || | |||| || ||||| Sbjct 121 CAACGACTTATTTTCGCAGGTAA 143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731638166896000