Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq1448 118 2e-21
seq3028 111 2e-19
seq10840 96.9 5e-15
>seq1448
Length=39285
Score = 118 bits (130), Expect = 2e-21
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|| |||||||| ||| | |||||||| ||||| || || ||||| | |||||||||
Sbjct 34730 AATATGCAAATTTTTGTAAAAACATTAACTGGTAAGACGATTACGCTTGAAGTCGAATCC 34789
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
|| |||| |||| ||| || ||| || || || ||||| |||||||||||||||||
Sbjct 34790 TCGGATACTATTGAAAATGTAAAAGCGAAGATTCAGGATAAGGAAGGCATACCTCCAGAT 34849
Query 155940 CAACAAAGATTGATTTATGCCGGTA 155964
|| ||| ||||||||| ||| ||||
Sbjct 34850 CAGCAACGATTGATTTTTGCAGGTA 34874
>seq3028
Length=62347
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | ||||| ||||| || ||||| || || || ||||| |||| ||
Sbjct 28316 ATGCAAATTTTCGTGAAAACTTTGACGGGTAAAACCATAACGTTGGAAGTGGAAGCATCG 28257
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || || || ||| ||||| ||||| || || || || || ||||| |||
Sbjct 28256 GATACGATCGAGAATGTTAAAGCAAAAATCCAAGACAAGGAGGGTATTCCACCAGACCAA 28197
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || |||| | |||||| ||||| || || ||| | || ||||| |||||||||
Sbjct 28196 CAGCGACTGATCTTTGCCGGGAAGCAACTGGAGGATGGTCGTACGTTATCGGATTATAAT 28137
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| || || |||||||||| || ||
Sbjct 28136 ATTCAGAAGGAATCGACGCTTCACTTGGT 28108
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | ||||||||||| || ||||| || || ||||| || |||| |||
Sbjct 28969 ATGCAAATTTTTGTGAAAACATTGACGGGCAAAACAATCACCTTAGAGGTTGAAGCCTCT 28910
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || ||| |||||| ||||| ||||| || ||||| || || ||||| ||
Sbjct 28909 GATACAATCGAAAATGTGAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAG 28850
Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967
||| | | |||| || |||| ||
Sbjct 28849 CAACGTCTTATTTTCGCTGGTATGC 28825
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|| |||||||| || | ||||||||||| |||||||| ||||| ||||||| |||| |
Sbjct 29747 AACATGCAAATCTTCGTAAAAACATTGACGGGAAAAACAATTACGCTAGAAGTGGAAGCT 29688
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
|| || | ||| || || ||| || |||||||| || ||||| || || || ||
Sbjct 29687 TCAGACACGATTGAGAATGTTAAAGCAAAGATACAAGACAAGGAAGGTATTCCACCGGAT 29628
Query 155940 CAACAAAGATTGATTTATGCCGGTA 155964
||||| | |||||| ||| ||||
Sbjct 29627 CAACAGCGCCTGATTTTTGCTGGTA 29603
>seq10840
Length=643
Score = 96.9 bits (106), Expect = 5e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||||||||| | |||||| | ||||| ||||| ||||| | || || ||| |||
Sbjct 1 ATGCAAATATTCGTGAAAACACTAACTGGTAAAACGATTACTCTTGAGGTAGAATCGTCT 60
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || |||||| |||||| |||||||| || ||||| || || || |||
Sbjct 61 GATACCATTGAGAATGTGAAAGCTAAAATTCAAGATAAGGAGGGCATTCCACCTGATCAA 120
Query 155943 CAAAGATTGATTTATGCCGGTAA 155965
||| || | |||| || |||||
Sbjct 121 CAACGACTTATTTTCGCAGGTAA 143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731638166896000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |