Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq10840 123 5e-23
seq3028 118 2e-21
seq1448 113 9e-20
>seq10840
Length=643
Score = 123 bits (136), Expect = 5e-23
Identities = 113/143 (79%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||| || || || | || |||||||||||||| || || || |||||||| ||||||
Sbjct 143 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGTGGAATGCCCTCCTTATCTTGAATTTTA 84
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
||| ||||| || | ||| ||||||||||| || |||||||| ||||||||||||
Sbjct 83 GCTTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGAGTAATCGTTTTACCAGTT 24
Query 192514 AATGTTTTAATAAATATCTGCAT 192536
| |||||| | ||||| |||||
Sbjct 23 AGTGTTTTCACGAATATTTGCAT 1
>seq3028
Length=62347
Score = 118 bits (130), Expect = 2e-21
Identities = 166/232 (72%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 192306 AATA-CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAAT 192364
|||| ||||| | |||||| | || || || | || | || || ||||||||||
Sbjct 28085 AATAGCCACCACGAAGACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGAATATTATAAT 28144
Query 192365 CAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAG 192424
| ||||| || || |||| |||| ||| || || |||||||| | || |||||| || |
Sbjct 28145 CCGATAACGTACGACCATCCTCCAGTTGCTTCCCGGCAAAGATCAGTCGCTGTTGGTCTG 28204
Query 192425 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATT 192484
|||| || || || || ||||| ||||| ||| ||||| || | ||| || | ||
Sbjct 28205 GTGGAATACCCTCCTTGTCTTGGATTTTTGCTTTAACATTCTCGATCGTATCCGATGCTT 28264
Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| ||||| | || ||||||||||| || || ||||| | || || |||||
Sbjct 28265 CCACTTCCAACGTTATGGTTTTACCCGTCAAAGTTTTCACGAAAATTTGCAT 28316
>seq1448
Length=39285
Score = 113 bits (124), Expect = 9e-20
Identities = 112/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||| ||||| || |||| || ||||| || ||||| ||||| ||||| || || ||
Sbjct 34874 TACCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATCCTGAATCTTCG 34815
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||||||||| |||| ||| || ||||| ||||| || ||||| || ||||||||||
Sbjct 34814 CTTTTACATTTTCAATAGTATCCGAGGATTCGACTTCAAGCGTAATCGTCTTACCAGTTA 34755
Query 192515 ATGTTTTAATAAATATCTGCATTTT 192539
||||||| | ||| || ||||| ||
Sbjct 34754 ATGTTTTTACAAAAATTTGCATATT 34730
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984157595106000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |