Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq10840 132 9e-26
seq3028 118 2e-21
seq1448 116 7e-21
>seq10840
Length=643
Score = 132 bits (146), Expect = 9e-26
Identities = 115/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||| || ||||| | || ||||| |||||||| || || || |||||||| ||||||
Sbjct 143 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGTGGAATGCCCTCCTTATCTTGAATTTTA 84
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
||| ||||| || ||||| ||||||||||| || |||||||| ||||||||||||
Sbjct 83 GCTTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGAGTAATCGTTTTACCAGTT 24
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
| |||||| | |||||| |||||
Sbjct 23 AGTGTTTTCACGAATATTTGCAT 1
>seq3028
Length=62347
Score = 118 bits (130), Expect = 2e-21
Identities = 136/183 (74%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946
|||||||||||| ||||| | || | || |||| ||| || || ||||| || | ||
Sbjct 28134 AATATTATAATCCGATAACGTACGACCATCCTCCAGTTGCTTCCCGGCAAAGATCAGTCG 28193
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
||||||||| ||||| || || || || ||||| ||||| ||| ||||| || ||
Sbjct 28194 CTGTTGGTCTGGTGGAATACCCTCCTTGTCTTGGATTTTTGCTTTAACATTCTCGATCGT 28253
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
||| || | ||| ||||| | || ||||||||||| || || ||||| | ||| || ||
Sbjct 28254 ATCCGATGCTTCCACTTCCAACGTTATGGTTTTACCCGTCAAAGTTTTCACGAAAATTTG 28313
Query 172067 CAT 172069
|||
Sbjct 28314 CAT 28316
Score = 109 bits (120), Expect = 1e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | |||||| || ||||| || ||||| || |||||||| ||
Sbjct 29603 TACCAGCAAAAATCAGGCGCTGTTGATCCGGTGGAATACCTTCCTTGTCTTGTATCTTTG 29662
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||| ||||| || || ||||| | ||| |||||||| ||||| ||||| || || |
Sbjct 29663 CTTTAACATTCTCAATCGTGTCTGAAGCTTCCACTTCTAGCGTAATTGTTTTTCCCGTCA 29722
Query 172048 ATGTTTTAATGAATATCTGCATTTT 172072
||||||| | ||| || ||||| ||
Sbjct 29723 ATGTTTTTACGAAGATTTGCATGTT 29747
Score = 98.7 bits (108), Expect = 2e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||| |||||||| | | || || ||||| || || || || || ||||| |||||
Sbjct 28518 TACCTGCAAAAATAAGGCGTTGCTGATCAGGAGGGATGCCCTCCTTGTCTTGAATTTTGG 28577
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||| ||||||||||| | ||||||||| || || |||||||| ||||| |
Sbjct 28578 CCTTTACATTCTCGATAGTATCTGAGGCTTCTACTTCCAGTGTTATGGTTTTGCCAGTAA 28637
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
||| || | ||| ||||||||
Sbjct 28638 GTGTCTTGACGAAAATCTGCAT 28659
>seq1448
Length=39285
Score = 116 bits (128), Expect = 7e-21
Identities = 120/156 (77%), Gaps = 1/156 (1%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||| |||||||| |||| || || || || ||||| ||||| ||||| || || ||
Sbjct 34874 TACCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATCCTGAATCTTCG 34815
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| |||||||| || ||||| ||||| || ||||| || ||||||||||
Sbjct 34814 CTTTTACATTTTCAATAGTATCCGAGGATTCGACTTCAAGCGTAATCGTCTTACCAGTTA 34755
Query 172048 ATGTTTTAATGAATATCTGCAT-TTTATTATAAAAA 172082
||||||| | || || ||||| |||| | | ||||
Sbjct 34754 ATGTTTTTACAAAAATTTGCATATTTAATCTGAAAA 34719
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904846809048000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |