Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq10840 132 9e-26 seq3028 118 2e-21 seq1448 116 7e-21 >seq10840 Length=643 Score = 132 bits (146), Expect = 9e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||| || ||||| | || ||||| |||||||| || || || |||||||| |||||| Sbjct 143 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGTGGAATGCCCTCCTTATCTTGAATTTTA 84 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 ||| ||||| || ||||| ||||||||||| || |||||||| |||||||||||| Sbjct 83 GCTTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGAGTAATCGTTTTACCAGTT 24 Query 172047 AATGTTTTAATGAATATCTGCAT 172069 | |||||| | |||||| ||||| Sbjct 23 AGTGTTTTCACGAATATTTGCAT 1 >seq3028 Length=62347 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||| ||||| | || | || |||| ||| || || ||||| || | || Sbjct 28134 AATATTATAATCCGATAACGTACGACCATCCTCCAGTTGCTTCCCGGCAAAGATCAGTCG 28193 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||||||| ||||| || || || || ||||| ||||| ||| ||||| || || Sbjct 28194 CTGTTGGTCTGGTGGAATACCCTCCTTGTCTTGGATTTTTGCTTTAACATTCTCGATCGT 28253 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | ||| ||||| | || ||||||||||| || || ||||| | ||| || || Sbjct 28254 ATCCGATGCTTCCACTTCCAACGTTATGGTTTTACCCGTCAAAGTTTTCACGAAAATTTG 28313 Query 172067 CAT 172069 ||| Sbjct 28314 CAT 28316 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | |||||| || ||||| || ||||| || |||||||| || Sbjct 29603 TACCAGCAAAAATCAGGCGCTGTTGATCCGGTGGAATACCTTCCTTGTCTTGTATCTTTG 29662 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| || || ||||| | ||| |||||||| ||||| ||||| || || | Sbjct 29663 CTTTAACATTCTCAATCGTGTCTGAAGCTTCCACTTCTAGCGTAATTGTTTTTCCCGTCA 29722 Query 172048 ATGTTTTAATGAATATCTGCATTTT 172072 ||||||| | ||| || ||||| || Sbjct 29723 ATGTTTTTACGAAGATTTGCATGTT 29747 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| |||||||| | | || || ||||| || || || || || ||||| ||||| Sbjct 28518 TACCTGCAAAAATAAGGCGTTGCTGATCAGGAGGGATGCCCTCCTTGTCTTGAATTTTGG 28577 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 |||||||| ||||||||||| | ||||||||| || || |||||||| ||||| | Sbjct 28578 CCTTTACATTCTCGATAGTATCTGAGGCTTCTACTTCCAGTGTTATGGTTTTGCCAGTAA 28637 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 ||| || | ||| |||||||| Sbjct 28638 GTGTCTTGACGAAAATCTGCAT 28659 >seq1448 Length=39285 Score = 116 bits (128), Expect = 7e-21 Identities = 120/156 (77%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| |||||||| |||| || || || || ||||| ||||| ||||| || || || Sbjct 34874 TACCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATCCTGAATCTTCG 34815 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| |||||||| || ||||| ||||| || ||||| || |||||||||| Sbjct 34814 CTTTTACATTTTCAATAGTATCCGAGGATTCGACTTCAAGCGTAATCGTCTTACCAGTTA 34755 Query 172048 ATGTTTTAATGAATATCTGCAT-TTTATTATAAAAA 172082 ||||||| | || || ||||| |||| | | |||| Sbjct 34754 ATGTTTTTACAAAAATTTGCATATTTAATCTGAAAA 34719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904846809048000