Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3028 140 3e-28 >seq3028 Length=62347 Score = 140 bits (154), Expect = 3e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || || | ||||| | || |||||||| || ||| | ||||| ||||| | Sbjct 28317 GATGCAAATTTTCGTGAAAACTTTGACGGGTAAAACCATAACGTTGGAAGTGGAAGCATC 28258 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 || || | || || | |||| ||||| ||||||||||| || || || || || || | Sbjct 28257 GGATACGATCGAGAATGTTAAAGCAAAA-ATCCAAGACAAGGAGGGTATTCCACCAGACC 28199 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 |||| || |||||||||||||||| || ||||||||| | | | || ||||||| Sbjct 28198 AACAGCGACTGATCTTTGCCGGGAAGCAACTGGAGGATGGTCGTACGTTATCGGATTATA 28139 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 | ||||| ||||||||||| || |||||||| Sbjct 28138 ATATTCAGAAGGAATCGACGCTTCACTTGGT 28108 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || |||||||| || || || | ||||| ||||| | Sbjct 29369 ATGCAAATTTTTGTGAAAACTCTTACCGGTAAGACAATCACATTGGAAGTGGAAGCATCT 29310 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || || | |||| | ||| ||||| ||||||||||| || || || ||||| Sbjct 29309 GACACCATCGAGAATGTTAAAGCGAAA-ATCCAGGACAAAGAAGGCATTCCACCAGATCA 29251 Query 24823 ACAACGTTTGATCTTTGCCGGGAA 24846 ||||| ||||| || || || || Sbjct 29250 GCAACGGTTGATTTTCGCTGGTAA 29227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449753857716800