Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq10840 125 1e-23
seq3028 105 1e-17
seq1448 102 1e-16
>seq10840
Length=643
Score = 125 bits (138), Expect = 1e-23
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||||||| | |||||| |||| || ||||| |||||| |||| |||||| |
Sbjct 2 TGCAAATATTCGTGAAAACACTAACTGGTAAAACGATTACTCTTGAGGTAGAATCGTCTG 61
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| | ||||| ||| |||||| ||| ||| || ||||||||||| |||||||
Sbjct 62 ATACCATTGAGAATGTGAAAGCTAAAATTCAAGATAAGGAGGGCATTCCACCTGATCAAC 121
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
|| |||| ||||| ||||||||
Sbjct 122 AACGACTTATTTTCGCAGGTAA 143
>seq3028
Length=62347
Score = 105 bits (116), Expect = 1e-17
Identities = 143/197 (73%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090
||||||| ||| | ||||| || || || ||||| || || | || || ||| |||
Sbjct 28315 TGCAAATTTTCGTGAAAACTTTGACGGGTAAAACCATAACGTTGGAAGTGGAAGCATCG- 28257
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
||||| || | ||||| ||| ||||| ||| || || || |||||||| || |||
Sbjct 28256 GATACGATCGAGAATGTTAAAGCAAAAATCCAAGACAAGGAGGGTATTCCACCAGACCAA 28197
Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210
|| |||| || ||||| || || ||| | || ||| | | |||||| | |||||||||
Sbjct 28196 CAGCGACTGATCTTTGCCGGGAAGCAACTGGAGGATGGTCGTACGTTATCGGATTATAAT 28137
Query 146211 ATACAAAAAGAATCGAC 146227
|| || || ||||||||
Sbjct 28136 ATTCAGAAGGAATCGAC 28120
Score = 102 bits (112), Expect = 1e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| |||||||||| || |||||||||||||| | || || ||| | |
Sbjct 29743 TGCAAATCTTCGTAAAAACATTGACGGGAAAAACAATTACGCTAGAAGTGGAAGCTTCAG 29684
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | ||||| ||| || |||||| || ||||| |||||||| |||||||
Sbjct 29683 ACACGATTGAGAATGTTAAAGCAAAGATACAAGACAAGGAAGGTATTCCACCGGATCAAC 29624
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
| | || |||||||| ||||
Sbjct 29623 AGCGCCTGATTTTTGCTGGTA 29603
>seq1448
Length=39285
Score = 102 bits (112), Expect = 1e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || ||||||||||||| || || || ||||| |||| || ||| |
Sbjct 34734 TGCAAATTTTTGTAAAAACATTAACTGGTAAGACGATTACGCTTGAAGTCGAATCCTCGG 34793
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| ||||||||||| || || || ||| |||||||| || || ||||| |
Sbjct 34794 ATACTATTGAAAATGTAAAAGCGAAGATTCAGGATAAGGAAGGCATACCTCCAGATCAGC 34853
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
|| || | |||||||||||||
Sbjct 34854 AACGATTGATTTTTGCAGGTA 34874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 785915219835200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |