Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq10840 125 1e-23 seq3028 105 1e-17 seq1448 102 1e-16 >seq10840 Length=643 Score = 125 bits (138), Expect = 1e-23 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | |||||| |||| || ||||| |||||| |||| |||||| | Sbjct 2 TGCAAATATTCGTGAAAACACTAACTGGTAAAACGATTACTCTTGAGGTAGAATCGTCTG 61 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| |||||| ||| ||| || ||||||||||| ||||||| Sbjct 62 ATACCATTGAGAATGTGAAAGCTAAAATTCAAGATAAGGAGGGCATTCCACCTGATCAAC 121 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || |||| ||||| |||||||| Sbjct 122 AACGACTTATTTTCGCAGGTAA 143 >seq3028 Length=62347 Score = 105 bits (116), Expect = 1e-17 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | ||||| || || || ||||| || || | || || ||| ||| Sbjct 28315 TGCAAATTTTCGTGAAAACTTTGACGGGTAAAACCATAACGTTGGAAGTGGAAGCATCG- 28257 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| || | ||||| ||| ||||| ||| || || || |||||||| || ||| Sbjct 28256 GATACGATCGAGAATGTTAAAGCAAAAATCCAAGACAAGGAGGGTATTCCACCAGACCAA 28197 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || |||| || ||||| || || ||| | || ||| | | |||||| | ||||||||| Sbjct 28196 CAGCGACTGATCTTTGCCGGGAAGCAACTGGAGGATGGTCGTACGTTATCGGATTATAAT 28137 Query 146211 ATACAAAAAGAATCGAC 146227 || || || |||||||| Sbjct 28136 ATTCAGAAGGAATCGAC 28120 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||||||||| || |||||||||||||| | || || ||| | | Sbjct 29743 TGCAAATCTTCGTAAAAACATTGACGGGAAAAACAATTACGCTAGAAGTGGAAGCTTCAG 29684 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| ||| || |||||| || ||||| |||||||| ||||||| Sbjct 29683 ACACGATTGAGAATGTTAAAGCAAAGATACAAGACAAGGAAGGTATTCCACCGGATCAAC 29624 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | || |||||||| |||| Sbjct 29623 AGCGCCTGATTTTTGCTGGTA 29603 >seq1448 Length=39285 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||||||||| || || || ||||| |||| || ||| | Sbjct 34734 TGCAAATTTTTGTAAAAACATTAACTGGTAAGACGATTACGCTTGAAGTCGAATCCTCGG 34793 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||||||| || || || ||| |||||||| || || ||||| | Sbjct 34794 ATACTATTGAAAATGTAAAAGCGAAGATTCAGGATAAGGAAGGCATACCTCCAGATCAGC 34853 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 || || | ||||||||||||| Sbjct 34854 AACGATTGATTTTTGCAGGTA 34874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785915219835200