Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3028 132 4e-26 >seq3028 Length=62347 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| |||||||| ||||| || ||||| |||||||||| | || ||| Sbjct 28101 ACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGAATATTATAATCCGATAACGTACGACC 28160 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || || ||| | |||| || || || || || ||||||||||| || Sbjct 28161 ATCCTCCAGTTGCTTCCCGGCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACCCTCCTT 28220 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | |||| ||| ||| | || | || || || ||| ||||| | ||||| Sbjct 28221 GTCTTGGATTTTTGCTTTAACATTCTCGATCGTATCCGATGCTTCCACTTCCAACGTTAT 28280 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||| || || || ||||| Sbjct 28281 GGTTTTACCCGTCAAAGTTTTCACGAAAATTTGCAT 28316 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 29664 TTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAG 29722 ||||||||| || || || ||||| |||||||| |||||| | || ||| | || | || Sbjct 28537 TTGCTGATCAGGAGGGATGCCCTCCTTGTCTTG-AATTTTGGCCTTTACATTCTCGATAG 28595 Query 29723 TGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCT 29782 | || || ||||||||| || ||||| ||||||||||| | || || || || |||| Sbjct 28596 TATCTGAGGCTTCTACTTCCAGTGTTATGGTTTTGCCAGTAAGTGTCTTGACGAAAATCT 28655 Query 29783 GCAT 29786 |||| Sbjct 28656 GCAT 28659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385099199403960