Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq3028 132 4e-26
>seq3028
Length=62347
Score = 132 bits (146), Expect = 4e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||| |||||||| ||||| || ||||| |||||||||| | || |||
Sbjct 28101 ACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGAATATTATAATCCGATAACGTACGACC 28160
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || ||||| || || ||| | |||| || || || || || ||||||||||| ||
Sbjct 28161 ATCCTCCAGTTGCTTCCCGGCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACCCTCCTT 28220
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | |||| ||| ||| | || | || || || ||| ||||| | |||||
Sbjct 28221 GTCTTGGATTTTTGCTTTAACATTCTCGATCGTATCCGATGCTTCCACTTCCAACGTTAT 28280
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||| || || || ||||| || || || |||||
Sbjct 28281 GGTTTTACCCGTCAAAGTTTTCACGAAAATTTGCAT 28316
Score = 86.0 bits (94), Expect = 5e-12
Identities = 95/124 (77%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 29664 TTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAG 29722
||||||||| || || || ||||| |||||||| |||||| | || ||| | || | ||
Sbjct 28537 TTGCTGATCAGGAGGGATGCCCTCCTTGTCTTG-AATTTTGGCCTTTACATTCTCGATAG 28595
Query 29723 TGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCT 29782
| || || ||||||||| || ||||| ||||||||||| | || || || || ||||
Sbjct 28596 TATCTGAGGCTTCTACTTCCAGTGTTATGGTTTTGCCAGTAAGTGTCTTGACGAAAATCT 28655
Query 29783 GCAT 29786
||||
Sbjct 28656 GCAT 28659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385099199403960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |