Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq156 183 2e-40 seq616 170 1e-36 seq1352 89.7 4e-12 >seq156 Length=140780 Score = 183 bits (202), Expect = 2e-40 Identities = 264/370 (71%), Gaps = 7/370 (2%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | |||||| |||| |||||| ||||||||||| || ||||| | || ||| Sbjct 84799 TTTTTGTCCAAACCATAAGCAATAGCAGCTGCAGTTGGTTCGTTGATAATACGCAGGACA 84740 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | |||||||||| || | |||||| || || |||| |||||| |||||||||||| Sbjct 84739 TTCAAACCAGCAATTGCACCAGAATCTTTCGTTGCCTGTCGTTGTGAGTCGTTAAAATAT 84680 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || || || || || |||||| | || | | || | | | || ||||||| Sbjct 84679 GCGGGGACTGTGATTACAGCATCTTTGACCGCATGACCGAGAAATGCTTCAGCTGTTTCC 84620 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GAGAATATTGCTTGGATTCAT 282569 ||||| ||| |||| ||| |||||||||| ||||| | ||| || || | ||| Sbjct 84619 TTCATCTTAACCAAAACCATCGATGAAATTTCTTCTGGTGTGAAGGTT--TTCGTTTCGC 84562 Query 282570 TTTGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCC 282626 | ||| |||| | | |||||| | |||| |||| || ||||| ||||||| Sbjct 84561 CCTTGTATTCAACTTGCACTTTTGGTTTACCACCACCAGCATTCATGACTTTGAATGGCC 84502 Query 282627 AATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 282686 | | |||||||||||| || || |||| ||| | | |||||| |||||||| | Sbjct 84501 AGTGTTTCATATCTGACTGTACTGACCCATCATCAAACTTACGACCAATCAATCGTTTCG 84442 Query 282687 CATCAAAAAT 282696 |||| |||| Sbjct 84441 CATCTGAAAT 84432 Score = 107 bits (118), Expect = 1e-17 Identities = 179/259 (69%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 281793 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 281852 ||||||| ||||| | ||| ||| |||| ||| ||| || |||| |||||| || | Sbjct 85647 CTTCATCTGGATTGATGCTTTTATTGAGTTCTTTGCCAGAAAAGAAATCTGAAAGCAGCT 85588 Query 281853 GTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATT 281912 | || || |||||||| | ||||| || ||||||||||| |||||||| || | || Sbjct 85587 TTTGCACTTTTGGAATACGGGTCGATCCACCTACTAATACAATATCATGCACTTGGGCTT 85528 Query 281913 TATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGT 281972 |||||| || | || | |||| ||||| || || | | | || | | Sbjct 85527 TATCCATCTTAGCGTCTCGCAGTGCTTTCTCAACCGGATCCATGGTTGAACGGAAGAGAT 85468 Query 281973 CTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGA 282032 | | |||||||||||| || ||| | |||| || || | | |||||||| |||| Sbjct 85467 CAGCACAAAGTTCTTCAAAACGAGCACGCGTAATGTTGGTATAAAAGTCAATTCCCTCGA 85408 Query 282033 ACAAAGAATCAACTTCAAT 282051 |||| ||||||| ||| || Sbjct 85407 ACAACGAATCAATTTCGAT 85389 Score = 96.9 bits (106), Expect = 3e-14 Identities = 183/266 (69%), Gaps = 9/266 (3%) Strand=Plus/Minus Query 281308 ATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAA 281367 |||||| ||| | ||| || |||||| | ||||| |||||| | ||| | || || Sbjct 86362 ATCTGC--CTT-ATATTTTTCAGCTTCCTGCACCATTCGCTCAATCTCATCCTTTGACAA 86306 Query 281368 TCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATC---AGC 281424 | ||| || ||| ||||||||||| || || || ||| ||||| || ||| Sbjct 86305 ACGTCCCTTATCATTGGTAATAGTAATCTTATTCTGCTTTCCTGTCGATTTGTCTTGAGC 86246 Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484 || | ||||| |||||||| || ||||| | ||| || || ||||||||||| || || Sbjct 86245 GGAA---ACATTCAGAATACCGTTCGCATCAATATCGAAAGTAACTTCAATTTGCGGCAC 86189 Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 || | |||||||||| || || || | ||| |||| || |||||| || || Sbjct 86188 GCCACGAGGAGCAGGTGGAATTCCAGATAATTCGAATTTTCCAAGCAAATTATTGTCCTT 86129 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAA 281570 || | |||||||| ||| ||| Sbjct 86128 TGTCATAGCACGTTCACCTTCGTAAA 86103 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 86116 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 86175 ||||| || |||| ||| |||||||||||||| || || || || |||| ||||| Sbjct 84790 AAACCATAAGCAATAGCAGCTGCAGTTGGTTCGTTGATAATACGCAGGACATTCAAACCA 84731 Query 86176 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 86235 |||||| | ||||||| ||||| |||| |||| ||| ||||||||||| || || Sbjct 84730 GCAATTGCACCAGAATCTTTCGTTGCCTGTCGTTGTGAGTCGTTAAAATATGCGGGGACT 84671 Query 86236 GTAATAACTGC 86246 || || || || Sbjct 84670 GTGATTACAGC 84660 >seq616 Length=68005 Score = 170 bits (188), Expect = 1e-36 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 ||| ||| |||||||| || ||||| || | ||||||||| || |||||||| || || Sbjct 31721 TTGCCTTCCTTTTTATCCAGCCCATAAGCGATAGCAGCAGCTGTAGGTTCATTGATGATA 31662 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | | |||||| ||||| ||||| | ||||||||||| || ||||||| ||||| ||| Sbjct 31661 CGAACAACATTGAGACCGGCAATAGTACCTGCATCTTTGGTAGCTTGTCGTTGTGCATCA 31602 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502 ||||| || || || || |||| ||| |||| | ||||||||||||| | || || | Sbjct 31601 TTAAAGTAAGCGGGCACTGTAACAACTGCATGTTTTACTTCTTTTCCCAAGTATGCTTCT 31542 Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551 || ||| |||||||||| | || ||||| |||||||| || |||| Sbjct 31541 GCAATTTCCTTCATTTTACCGAGAACCATTGCTGAAATTTCCTCAGGAG 31493 >seq1352 Length=23028 Score = 89.7 bits (98), Expect = 4e-12 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 432283 TGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTG 432342 ||| ||| |||||||| || |||||||||||||| ||||| || || || ||| | || | Sbjct 4528 TGAAAGGAAAAGAAGGCCGAATTAGAGGAAATTTAATGGGCAAACGAGTGGATTTCTCGG 4587 Query 432343 CACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCA 432402 | || || || ||||| | ||||| ||| | | | || |||||| || |||| || Sbjct 4588 CTCGAACCGTAATTACACCAGATCCAAATCTGCCCATAGATACAGTTGGCGTGCCTCGCA 4647 Query 432403 TTATTGCGAAAAATCTTACTTTTGACGAAATTGTAAC 432439 |||||| ||||| | || || |||||||| || Sbjct 4648 CTATTGCACAAAATATGACATTCCCAGAAATTGTTAC 4684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739375512016560