Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq156 183 2e-40
seq616 170 1e-36
seq1352 89.7 4e-12
>seq156
Length=140780
Score = 183 bits (202), Expect = 2e-40
Identities = 264/370 (71%), Gaps = 7/370 (2%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || | |||||| |||| |||||| ||||||||||| || ||||| | || |||
Sbjct 84799 TTTTTGTCCAAACCATAAGCAATAGCAGCTGCAGTTGGTTCGTTGATAATACGCAGGACA 84740
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| | |||||||||| || | |||||| || || |||| |||||| ||||||||||||
Sbjct 84739 TTCAAACCAGCAATTGCACCAGAATCTTTCGTTGCCTGTCGTTGTGAGTCGTTAAAATAT 84680
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511
|| || || || || || |||||| | || | | || | | | || |||||||
Sbjct 84679 GCGGGGACTGTGATTACAGCATCTTTGACCGCATGACCGAGAAATGCTTCAGCTGTTTCC 84620
Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GAGAATATTGCTTGGATTCAT 282569
||||| ||| |||| ||| |||||||||| ||||| | ||| || || | |||
Sbjct 84619 TTCATCTTAACCAAAACCATCGATGAAATTTCTTCTGGTGTGAAGGTT--TTCGTTTCGC 84562
Query 282570 TTTGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCC 282626
| ||| |||| | | |||||| | |||| |||| || ||||| |||||||
Sbjct 84561 CCTTGTATTCAACTTGCACTTTTGGTTTACCACCACCAGCATTCATGACTTTGAATGGCC 84502
Query 282627 AATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 282686
| | |||||||||||| || || |||| ||| | | |||||| |||||||| |
Sbjct 84501 AGTGTTTCATATCTGACTGTACTGACCCATCATCAAACTTACGACCAATCAATCGTTTCG 84442
Query 282687 CATCAAAAAT 282696
|||| ||||
Sbjct 84441 CATCTGAAAT 84432
Score = 107 bits (118), Expect = 1e-17
Identities = 179/259 (69%), Gaps = 0/259 (0%)
Strand=Plus/Minus
Query 281793 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 281852
||||||| ||||| | ||| ||| |||| ||| ||| || |||| |||||| || |
Sbjct 85647 CTTCATCTGGATTGATGCTTTTATTGAGTTCTTTGCCAGAAAAGAAATCTGAAAGCAGCT 85588
Query 281853 GTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATT 281912
| || || |||||||| | ||||| || ||||||||||| |||||||| || | ||
Sbjct 85587 TTTGCACTTTTGGAATACGGGTCGATCCACCTACTAATACAATATCATGCACTTGGGCTT 85528
Query 281913 TATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGT 281972
|||||| || | || | |||| ||||| || || | | | || | |
Sbjct 85527 TATCCATCTTAGCGTCTCGCAGTGCTTTCTCAACCGGATCCATGGTTGAACGGAAGAGAT 85468
Query 281973 CTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGA 282032
| | |||||||||||| || ||| | |||| || || | | |||||||| ||||
Sbjct 85467 CAGCACAAAGTTCTTCAAAACGAGCACGCGTAATGTTGGTATAAAAGTCAATTCCCTCGA 85408
Query 282033 ACAAAGAATCAACTTCAAT 282051
|||| ||||||| ||| ||
Sbjct 85407 ACAACGAATCAATTTCGAT 85389
Score = 96.9 bits (106), Expect = 3e-14
Identities = 183/266 (69%), Gaps = 9/266 (3%)
Strand=Plus/Minus
Query 281308 ATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAA 281367
|||||| ||| | ||| || |||||| | ||||| |||||| | ||| | || ||
Sbjct 86362 ATCTGC--CTT-ATATTTTTCAGCTTCCTGCACCATTCGCTCAATCTCATCCTTTGACAA 86306
Query 281368 TCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATC---AGC 281424
| ||| || ||| ||||||||||| || || || ||| ||||| || |||
Sbjct 86305 ACGTCCCTTATCATTGGTAATAGTAATCTTATTCTGCTTTCCTGTCGATTTGTCTTGAGC 86246
Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484
|| | ||||| |||||||| || ||||| | ||| || || ||||||||||| || ||
Sbjct 86245 GGAA---ACATTCAGAATACCGTTCGCATCAATATCGAAAGTAACTTCAATTTGCGGCAC 86189
Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544
|| | |||||||||| || || || | ||| |||| || |||||| || ||
Sbjct 86188 GCCACGAGGAGCAGGTGGAATTCCAGATAATTCGAATTTTCCAAGCAAATTATTGTCCTT 86129
Query 281545 AGTGAATTTTCGTTCACCCTCGAAAA 281570
|| | |||||||| ||| |||
Sbjct 86128 TGTCATAGCACGTTCACCTTCGTAAA 86103
Score = 87.8 bits (96), Expect = 1e-11
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 86116 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 86175
||||| || |||| ||| |||||||||||||| || || || || |||| |||||
Sbjct 84790 AAACCATAAGCAATAGCAGCTGCAGTTGGTTCGTTGATAATACGCAGGACATTCAAACCA 84731
Query 86176 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 86235
|||||| | ||||||| ||||| |||| |||| ||| ||||||||||| || ||
Sbjct 84730 GCAATTGCACCAGAATCTTTCGTTGCCTGTCGTTGTGAGTCGTTAAAATATGCGGGGACT 84671
Query 86236 GTAATAACTGC 86246
|| || || ||
Sbjct 84670 GTGATTACAGC 84660
>seq616
Length=68005
Score = 170 bits (188), Expect = 1e-36
Identities = 175/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382
||| ||| |||||||| || ||||| || | ||||||||| || |||||||| || ||
Sbjct 31721 TTGCCTTCCTTTTTATCCAGCCCATAAGCGATAGCAGCAGCTGTAGGTTCATTGATGATA 31662
Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442
| | |||||| ||||| ||||| | ||||||||||| || ||||||| ||||| |||
Sbjct 31661 CGAACAACATTGAGACCGGCAATAGTACCTGCATCTTTGGTAGCTTGTCGTTGTGCATCA 31602
Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502
||||| || || || || |||| ||| |||| | ||||||||||||| | || || |
Sbjct 31601 TTAAAGTAAGCGGGCACTGTAACAACTGCATGTTTTACTTCTTTTCCCAAGTATGCTTCT 31542
Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551
|| ||| |||||||||| | || ||||| |||||||| || ||||
Sbjct 31541 GCAATTTCCTTCATTTTACCGAGAACCATTGCTGAAATTTCCTCAGGAG 31493
>seq1352
Length=23028
Score = 89.7 bits (98), Expect = 4e-12
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 432283 TGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTG 432342
||| ||| |||||||| || |||||||||||||| ||||| || || || ||| | || |
Sbjct 4528 TGAAAGGAAAAGAAGGCCGAATTAGAGGAAATTTAATGGGCAAACGAGTGGATTTCTCGG 4587
Query 432343 CACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCA 432402
| || || || ||||| | ||||| ||| | | | || |||||| || |||| ||
Sbjct 4588 CTCGAACCGTAATTACACCAGATCCAAATCTGCCCATAGATACAGTTGGCGTGCCTCGCA 4647
Query 432403 TTATTGCGAAAAATCTTACTTTTGACGAAATTGTAAC 432439
|||||| ||||| | || || |||||||| ||
Sbjct 4648 CTATTGCACAAAATATGACATTCCCAGAAATTGTTAC 4684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739375512016560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |