Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq3028 165 2e-35
seq1448 131 3e-25
seq10840 105 1e-17
>seq3028
Length=62347
Score = 165 bits (182), Expect = 2e-35
Identities = 166/216 (77%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| ||||| ||||| || || ||||| ||||| ||||||||||| |||| | | |||
Sbjct 28101 ACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGAATATTATAATCCGATAACGTACGACC 28160
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || ||||| || || |||||||| |||| ||||| ||||| || || || |||||
Sbjct 28161 ATCCTCCAGTTGCTTCCCGGCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACCCTCCTT 28220
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||||| || |||||||| ||||| || |||||||| | ||| |||||||| |||||
Sbjct 28221 GTCTTGGATTTTTGCTTTAACATTCTCGATCGTATCCGATGCTTCCACTTCCAACGTTAT 28280
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || || ||||| || || || || || |||||
Sbjct 28281 GGTTTTACCCGTCAAAGTTTTCACGAAAATTTGCAT 28316
Score = 113 bits (124), Expect = 9e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
||||| || || || | ||| |||||||| || ||||||||||| |||||||| || |||
Sbjct 28830 CCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCT 28889
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| |||||||| || |||||| | ||| || || || || || || ||||| |||||
Sbjct 28890 TTCACATTTTCGATTGTATCAGAGGCTTCAACCTCTAAGGTGATTGTTTTGCCCGTCAAT 28949
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || ||||| || |||||
Sbjct 28950 GTTTTCACAAAAATTTGCAT 28969
Score = 109 bits (120), Expect = 1e-18
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | |||||||| || || || |||||||| ||||| |||||||||
Sbjct 29605 CCAGCAAAAATCAGGCGCTGTTGATCCGGTGGAATACCTTCCTTGTCTTGTATCTTTGCT 29664
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||| |||||||| || || ||| ||||| | || || || || || |||||
Sbjct 29665 TTAACATTCTCAATCGTGTCTGAAGCTTCCACTTCTAGCGTAATTGTTTTTCCCGTCAAT 29724
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| ||||| || || |||||
Sbjct 29725 GTTTTTACGAAGATTTGCAT 29744
Score = 107 bits (118), Expect = 4e-18
Identities = 110/141 (78%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|| ||||| || || | ||| ||||| ||||| || || ||||| |||||||| || ||
Sbjct 28520 CCTGCAAAAATAAGGCGTTGCTGATCAGGAGGGATGCCCTCCTTGTCTTGAATTTTGGCC 28579
Query 82731 TTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789
|||||||| || || ||||| | ||| ||||||||||| ||||| || ||||| || |
Sbjct 28580 TTTACATTCTCGATAGTATC-TGAGGCTTCTACTTCCAGTGTTATGGTTTTGCCAGTAAG 28638
Query 82790 CGTCTTTACAAATATCTGCAT 82810
||||| || || ||||||||
Sbjct 28639 TGTCTTGACGAAAATCTGCAT 28659
>seq1448
Length=39285
Score = 131 bits (144), Expect = 3e-25
Identities = 113/140 (81%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|| ||||| || | || ||| |||||||||||||| ||||||||||| |||||||| |||
Sbjct 34872 CCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATCCTGAATCTTCGCT 34813
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||||||||| ||||| | ||| ||||| | || |||||||| || || ||
Sbjct 34812 TTTACATTTTCAATAGTATCCGAGGATTCGACTTCAAGCGTAATCGTCTTACCAGTTAAT 34753
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| |||||||| || |||||
Sbjct 34752 GTTTTTACAAAAATTTGCAT 34733
>seq10840
Length=643
Score = 105 bits (116), Expect = 1e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || || || || |||| ||||||||| || || || || |||||||||||||| ||
Sbjct 143 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGTGGAATGCCCTCCTTATCTTGAATTTTA 84
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
||||| ||||| ||||| |||||| | |||||| || | ||| ||||| || || ||
Sbjct 83 GCTTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGAGTAATCGTTTTACCAGTT 24
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| || || || ||||| |||||
Sbjct 23 AGTGTTTTCACGAATATTTGCAT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981505663864840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |