Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3028 165 2e-35 seq1448 131 3e-25 seq10840 105 1e-17 >seq3028 Length=62347 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| || || ||||| ||||| ||||||||||| |||| | | ||| Sbjct 28101 ACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGAATATTATAATCCGATAACGTACGACC 28160 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || ||||| || || |||||||| |||| ||||| ||||| || || || ||||| Sbjct 28161 ATCCTCCAGTTGCTTCCCGGCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACCCTCCTT 28220 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| || |||||||| ||||| || |||||||| | ||| |||||||| ||||| Sbjct 28221 GTCTTGGATTTTTGCTTTAACATTCTCGATCGTATCCGATGCTTCCACTTCCAACGTTAT 28280 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||| || || || || || ||||| Sbjct 28281 GGTTTTACCCGTCAAAGTTTTCACGAAAATTTGCAT 28316 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| || || || | ||| |||||||| || ||||||||||| |||||||| || ||| Sbjct 28830 CCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCT 28889 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| || |||||| | ||| || || || || || || ||||| ||||| Sbjct 28890 TTCACATTTTCGATTGTATCAGAGGCTTCAACCTCTAAGGTGATTGTTTTGCCCGTCAAT 28949 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || ||||| || ||||| Sbjct 28950 GTTTTCACAAAAATTTGCAT 28969 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | |||||||| || || || |||||||| ||||| ||||||||| Sbjct 29605 CCAGCAAAAATCAGGCGCTGTTGATCCGGTGGAATACCTTCCTTGTCTTGTATCTTTGCT 29664 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| |||||||| || || ||| ||||| | || || || || || ||||| Sbjct 29665 TTAACATTCTCAATCGTGTCTGAAGCTTCCACTTCTAGCGTAATTGTTTTTCCCGTCAAT 29724 Query 82791 GTCTTTACAAATATCTGCAT 82810 || ||||| || || ||||| Sbjct 29725 GTTTTTACGAAGATTTGCAT 29744 Score = 107 bits (118), Expect = 4e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || || | ||| ||||| ||||| || || ||||| |||||||| || || Sbjct 28520 CCTGCAAAAATAAGGCGTTGCTGATCAGGAGGGATGCCCTCCTTGTCTTGAATTTTGGCC 28579 Query 82731 TTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789 |||||||| || || ||||| | ||| ||||||||||| ||||| || ||||| || | Sbjct 28580 TTTACATTCTCGATAGTATC-TGAGGCTTCTACTTCCAGTGTTATGGTTTTGCCAGTAAG 28638 Query 82790 CGTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| Sbjct 28639 TGTCTTGACGAAAATCTGCAT 28659 >seq1448 Length=39285 Score = 131 bits (144), Expect = 3e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || | || ||| |||||||||||||| ||||||||||| |||||||| ||| Sbjct 34872 CCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATCCTGAATCTTCGCT 34813 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||||||||| ||||| | ||| ||||| | || |||||||| || || || Sbjct 34812 TTTACATTTTCAATAGTATCCGAGGATTCGACTTCAAGCGTAATCGTCTTACCAGTTAAT 34753 Query 82791 GTCTTTACAAATATCTGCAT 82810 || |||||||| || ||||| Sbjct 34752 GTTTTTACAAAAATTTGCAT 34733 >seq10840 Length=643 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || || || |||| ||||||||| || || || || |||||||||||||| || Sbjct 143 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGTGGAATGCCCTCCTTATCTTGAATTTTA 84 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||| ||||| |||||| | |||||| || | ||| ||||| || || || Sbjct 83 GCTTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGAGTAATCGTTTTACCAGTT 24 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || || ||||| ||||| Sbjct 23 AGTGTTTTCACGAATATTTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981505663864840