Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3028 84.2 1e-11 seq1448 84.2 1e-11 >seq3028 Length=62347 Score = 84.2 bits (92), Expect = 1e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || |||||||| || ||||||||| | || | ||||||||||| |||||| Sbjct 29227 TTACCAGCGAAAATCAACCGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTC 29286 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | || ||||| || | |||||| || |||||| || | ||||| || ||||| || Sbjct 29287 -GCTTTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTCTTACCGGT 29345 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 | ||||| ||||| || |||||| Sbjct 29346 AAGAGTTTTCACAAAAATTTGCATA 29370 >seq1448 Length=39285 Score = 84.2 bits (92), Expect = 1e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 33610 CCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGT 33669 || ||||||||||| || ||||||||| | || | ||||| || || ||| ||| | Sbjct 34872 CCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATCCTGAATCTTCGCT 34813 Query 33670 TTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAA 33728 || | ||| ||| || || ||||| || |||| ||| ||||| ||||| ||||| Sbjct 34812 TTTA-CATTTTCAATAGTATCCGAGGATTCGACTTCAAGCGTAATCGTCTTACCAGTTAA 34754 Query 33729 CGTTTTTACAAAGATCTGCATAGTT 33753 ||||||||||| || |||||| || Sbjct 34753 TGTTTTTACAAAAATTTGCATATTT 34729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328601604595200