Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3028 111 2e-19 seq1448 109 6e-19 seq10840 100 3e-16 >seq3028 Length=62347 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCT 134568 ||| ||||| |||||||| ||||| || || || | |||| | || || || || | Sbjct 28113 GTGAAGCGTCGATTCCTTCTGAATATTATAATCCGATAACG-TACGACCATCCTCCAGTT 28171 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 | || || ||||| |||| ||||| || || || || || || || || ||||| |||| Sbjct 28172 GCTTCCCGGCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACCCTCCTTGTCTTGGATTT 28231 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 || ||| || || | || || || | |||||| || | || ||||||||||| | Sbjct 28232 TTGCTTTAACATTCTCGATCGTATCCGATGCTTCCACTTCCAACGTTATGGTTTTACCCG 28291 Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713 | |||||||| |||||||||||||| Sbjct 28292 TCAAAGTTTTCACGAAAATTTGCAT 28316 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || |||||||| || |||||||| || || ||||||||||| || || ||||| Sbjct 29227 TTACCAGCGAAAATCAACCGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTC 29286 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||||| || | |||||| || | || || || |||||||| Sbjct 29287 GCTTTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTCTTACCGGTA 29346 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | |||||| || ||||||||||| Sbjct 29347 AGAGTTTTCACAAAAATTTGCAT 29369 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || ||||| | ||| |||||||| || || || ||||| || ||||||||||| | Sbjct 28830 CCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCT 28889 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || || ||||| || || || Sbjct 28890 TTCACATTTTCGATTGTATCAGAGGCTTCAACCTCTAAGGTGATTGTTTTGCCCGTCAAT 28949 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || ||||||||||| Sbjct 28950 GTTTTCACAAAAATTTGCAT 28969 >seq1448 Length=39285 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 |||||||||||||| || |||||||| || ||||||||||| || || ||||| || | Sbjct 34872 CCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATCCTGAATCTTCGCT 34813 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || || ||||| || || || ||||| || ||||| ||||| Sbjct 34812 TTTACATTTTCAATAGTATCCGAGGATTCGACTTCAAGCGTAATCGTCTTACCAGTTAAT 34753 Query 134694 GTTTTAACGAAAATTTGCATTTT 134716 ||||| || ||||||||||| || Sbjct 34752 GTTTTTACAAAAATTTGCATATT 34730 >seq10840 Length=643 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || ||||| ||||| | || || ||||| || || ||||| || || ||||||||||| Sbjct 143 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGTGGAATGCCCTCCTTATCTTGAATTTTA 84 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | || || |||||||| || || |||||||| |||||||| ||| Sbjct 83 GCTTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGAGTAATCGTTTTACCAGTT 24 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | ||||| ||||| |||||||| Sbjct 23 AGTGTTTTCACGAATATTTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505236925211200