Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq3028 111 2e-19
seq1448 109 6e-19
seq10840 100 3e-16
>seq3028
Length=62347
Score = 111 bits (122), Expect = 2e-19
Identities = 149/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCT 134568
||| ||||| |||||||| ||||| || || || | |||| | || || || || |
Sbjct 28113 GTGAAGCGTCGATTCCTTCTGAATATTATAATCCGATAACG-TACGACCATCCTCCAGTT 28171
Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628
| || || ||||| |||| ||||| || || || || || || || || ||||| ||||
Sbjct 28172 GCTTCCCGGCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACCCTCCTTGTCTTGGATTT 28231
Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688
|| ||| || || | || || || | |||||| || | || ||||||||||| |
Sbjct 28232 TTGCTTTAACATTCTCGATCGTATCCGATGCTTCCACTTCCAACGTTATGGTTTTACCCG 28291
Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713
| |||||||| ||||||||||||||
Sbjct 28292 TCAAAGTTTTCACGAAAATTTGCAT 28316
Score = 96.9 bits (106), Expect = 4e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || || |||||||| || |||||||| || || ||||||||||| || || |||||
Sbjct 29227 TTACCAGCGAAAATCAACCGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTC 29286
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
||| || || | ||||| || | |||||| || | || || || ||||||||
Sbjct 29287 GCTTTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTCTTACCGGTA 29346
Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713
| |||||| || |||||||||||
Sbjct 29347 AGAGTTTTCACAAAAATTTGCAT 29369
Score = 82.4 bits (90), Expect = 8e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| || ||||| | ||| |||||||| || || || ||||| || ||||||||||| |
Sbjct 28830 CCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCT 28889
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || || | ||| || || | || || ||||| || || ||
Sbjct 28890 TTCACATTTTCGATTGTATCAGAGGCTTCAACCTCTAAGGTGATTGTTTTGCCCGTCAAT 28949
Query 134694 GTTTTAACGAAAATTTGCAT 134713
||||| || |||||||||||
Sbjct 28950 GTTTTCACAAAAATTTGCAT 28969
>seq1448
Length=39285
Score = 109 bits (120), Expect = 6e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|||||||||||||| || |||||||| || ||||||||||| || || ||||| || |
Sbjct 34872 CCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATCCTGAATCTTCGCT 34813
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | || || || ||||| || || || ||||| || ||||| |||||
Sbjct 34812 TTTACATTTTCAATAGTATCCGAGGATTCGACTTCAAGCGTAATCGTCTTACCAGTTAAT 34753
Query 134694 GTTTTAACGAAAATTTGCATTTT 134716
||||| || ||||||||||| ||
Sbjct 34752 GTTTTTACAAAAATTTGCATATT 34730
>seq10840
Length=643
Score = 100 bits (110), Expect = 3e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| ||||| ||||| | || || ||||| || || ||||| || || |||||||||||
Sbjct 143 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGTGGAATGCCCTCCTTATCTTGAATTTTA 84
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
||| || || | || || |||||||| || || |||||||| |||||||| |||
Sbjct 83 GCTTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGAGTAATCGTTTTACCAGTT 24
Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713
| ||||| ||||| ||||||||
Sbjct 23 AGTGTTTTCACGAATATTTGCAT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505236925211200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |