Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq3028 105 6e-18
seq10840 96.9 3e-15
seq1448 84.2 2e-11
>seq3028
Length=62347
Score = 105 bits (116), Expect = 6e-18
Identities = 99/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || || |||||||| |||| || || | ||||| || ||||||||| | ||
Sbjct 29745 CATGCAAATCTTCGTAAAAACATTGACGGGAAAAACAATTACGCTAGAAGTGGAAGCTTC 29686
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| ||||||||| || ||| ||| || |||||||| ||||| || ||||| |||||
Sbjct 29685 AGACACGATTGAGAATGTTAAAGCAAAGATACAAGACAAGGAAGGTATTCCACCGGATCA 29626
Query 27107 ACAGCG 27112
||||||
Sbjct 29625 ACAGCG 29620
Score = 100 bits (110), Expect = 2e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| |||||||| ||||| ||| | || || | ||||||||| | ||
Sbjct 29369 ATGCAAATTTTTGTGAAAACTCTTACCGGTAAGACAATCACATTGGAAGTGGAAGCATCT 29310
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| || ||| ||||| || |||||||||||||| ||||| |||||
Sbjct 29309 GACACCATCGAGAATGTTAAAGCGAAAATCCAGGACAAAGAAGGCATTCCACCAGATCAG 29250
Query 27108 CAGCGTTTAATATACGCCGGCAA 27130
|| || || || | ||| || ||
Sbjct 29249 CAACGGTTGATTTTCGCTGGTAA 29227
>seq10840
Length=643
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| ||||| || ||||| || || || || | ||||||||||| || ||| ||||
Sbjct 1 ATGCAAATATTCGTGAAAACACTAACTGGTAAAACGATTACTCTTGAGGTAGAATCGTCT 60
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||||| || ||| ||||||||||| || || ||||| ||||| ||||||
Sbjct 61 GATACCATTGAGAATGTGAAAGCTAAAATTCAAGATAAGGAGGGCATTCCACCTGATCAA 120
Query 27108 CAGCGTTTAATATACGCCGGCAA 27130
|| || | || | ||| || ||
Sbjct 121 CAACGACTTATTTTCGCAGGTAA 143
>seq1448
Length=39285
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||||||||| | || || ||| | ||||| |||||||| ||| | ||
Sbjct 34733 ATGCAAATTTTTGTAAAAACATTAACTGGTAAGACGATTACGCTTGAAGTCGAATCCTCG 34792
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| || ||||| || || ||||||||||| || |||||
Sbjct 34793 GATACTATTGAAAATGTAAAAGCGAAGATTCAGGATAAGGAAGGCATACCTCCAGATCAG 34852
Query 27108 CAGCGTTTAAT 27118
|| || || ||
Sbjct 34853 CAACGATTGAT 34863
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434779443571200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |