Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3028 161 2e-34 seq1723 100 7e-16 seq10840 86.0 1e-11 >seq3028 Length=62347 Score = 161 bits (178), Expect = 2e-34 Identities = 171/223 (77%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || ||||| || || | ||| ||||| | || || Sbjct 28095 ACGAAGACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGAATATTATAATCCGATAACGT 28154 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || || |||||||| || ||||| ||||| |||||||| || |||||||| Sbjct 28155 ACGACCATCCTCCAGTTGCTTCCCGGCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACC 28214 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 |||||||||||||| |||||| || ||| ||||| || || || | |||||| || | Sbjct 28215 CTCCTTGTCTTGGAT-TTTTGCTTTAACATTCTCGATCGTATCCGATGCTTCCACTTCCA 28273 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||| || || || |||||||||||||| | ||| | |||||| Sbjct 28274 ACGTTATGGTTTTACCCGTCAAAGTTTTCACGAAAATTTGCAT 28316 Score = 118 bits (130), Expect = 3e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| || || || || ||||| || || |||||||||||||||||||| |||||| Sbjct 29605 CCAGCAAAAATCAGGCGCTGTTGATCCGGTGGAATACCTTCCTTGTCTTGTATCTTTGCT 29664 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| || || |||||||| | |||||| |||| ||| || || || |||||||| Sbjct 29665 TTAACATTCTCAATCGTGTCTGAAGCTTCCACTTCTAGCGTAATTGTTTTTCCCGTCAAT 29724 Query 225694 GTTTTTATGAACACTTGCATTTT 225716 ||||||| ||| | |||||| || Sbjct 29725 GTTTTTACGAAGATTTGCATGTT 29747 Score = 116 bits (128), Expect = 9e-21 Identities = 112/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 |||||||| ||||| ||||| || || || || || |||||||||||||| || ||| || Sbjct 28830 CCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAAT-TTTGGC 28888 Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 |||||| |||||| || || |||| ||| || ||||| ||||| || ||||||||||| Sbjct 28889 TTTCACATTTTCGATTGTATCAGAGGCTTCAACCTCTAAGGTGATTGTTTTGCCCGTCAA 28948 Query 225693 AGTTTTTATGAACACTTGCAT 225713 ||||| | || | |||||| Sbjct 28949 TGTTTTCACAAAAATTTGCAT 28969 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || |||||||| || | ||||| || || || ||||| ||||| ||||| ||||| ||| Sbjct 29227 TTACCAGCGAAAATCAACCGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGAT-TTT 29285 Query 225631 TGCTTCA-CAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||| | || ||||||||||| || | |||||| || || ||||| ||||| || || Sbjct 29286 CGCTTTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTCTTACCGGT 29345 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | |||||| | || | |||||| Sbjct 29346 AAGAGTTTTCACAAAAATTTGCAT 29369 >seq1723 Length=17528 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||| ||||| ||||| || || ||||| || ||||| ||||| ||||||||||| Sbjct 3976 AATATTTGTCCATCTGTAATTGAAATTACATTGGTGGGGATGTAAGCGGAAACATCACCA 4035 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 ||||| ||||| | ||| |||| ||||| || || ||||| ||| Sbjct 4036 GCTTGAGTTTCAATAACTGGTAGTGCTGTCAGCGAGCCACCTCCA 4080 >seq10840 Length=643 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||| |||||||||||||| || || ||||| || ||||| ||||| || ||| Sbjct 143 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGTGGAATGCCCTCCTTATCTTGAAT-TTT 85 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || |||||| || ||||| || || | ||| || || | || ||||| || || || Sbjct 84 AGCTTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGAGTAATCGTTTTACCAGT 25 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | ||||| | ||| | |||||| Sbjct 24 TAGTGTTTTCACGAATATTTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192140660938640