Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3028 120 7e-22 seq10840 100 7e-16 seq1448 86.0 2e-11 >seq3028 Length=62347 Score = 120 bits (132), Expect = 7e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||||||| | || || ||||| || || | || |||||| || || Sbjct 28313 CAAATTTTCGTGAAAACTTTGACGGGTAAAACCATAACGTTGGAAGTGGAAGCATCGGAT 28254 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| ||| || || ||||| || || || || || ||||| || Sbjct 28253 ACGATCGAGAATGTTAAAGCAAAAATCCAAGACAAGGAGGGTATTCCACCAGACCAACAG 28194 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| ||||| || || || || ||||| | || | | |||||||| | Sbjct 28193 CGACTGATCTTTGCCGGGAAGCAACTGGAGGATGGTCGTACGTTATCGGATTATAATATT 28134 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || ||||| || || || |||| || Sbjct 28133 CAGAAGGAATCGACGCTTCA-CTTGGTT 28107 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| |||||||| | || || ||||| |||||| | ||||| ||| ||| || Sbjct 28966 CAAATTTTTGTGAAAACATTGACGGGCAAAACAATCACCTTAGAGGTTGAAGCCTCTGAT 28907 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| || ||||| ||||| ||||||||||| || || |||||| Sbjct 28906 ACAATCGAAAATGTGAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAGCAA 28847 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| ||||| || Sbjct 28846 CGTCTTATTTTCGCTGG 28830 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||||||||| || || || || ||||| | || |||||| || ||| Sbjct 29366 CAAATTTTTGTGAAAACTCTTACCGGTAAGACAATCACATTGGAAGTGGAAGCATCTGAC 29307 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| || || |||||||||||||| || || || || |||||| Sbjct 29306 ACCATCGAGAATGTTAAAGCGAAAATCCAGGACAAAGAAGGCATTCCACCAGATCAGCAA 29247 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || ||||| || || Sbjct 29246 CGGTTGATTTTCGCTGGTAA 29227 >seq10840 Length=643 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| || || || |||||||| || || ||||| ||| || || Sbjct 4 CAAATATTCGTGAAAACACTAACTGGTAAAACGATTACTCTTGAGGTAGAATCGTCTGAT 63 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| || ||||| || || || || || || || || || ||| Sbjct 64 ACCATTGAGAATGTGAAAGCTAAAATTCAAGATAAGGAGGGCATTCCACCTGATCAACAA 123 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||||||| ||||| || || Sbjct 124 CGACTTATTTTCGCAGGTAA 143 >seq1448 Length=39285 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || || ||||| || || || || ||| ||| || Sbjct 34736 CAAATTTTTGTAAAAACATTAACTGGTAAGACGATTACGCTTGAAGTCGAATCCTCGGAT 34795 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||||||||| || ||||| || ||||| || |||||| Sbjct 34796 ACTATTGAAAATGTAAAAGCGAAGATTCAGGATAAGGAAGGCATACCTCCAGATCAGCAA 34855 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | || || || || Sbjct 34856 CGATTGATTTTTGCAGG 34872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203336993078640