Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq3028 120 7e-22
seq10840 100 7e-16
seq1448 86.0 2e-11
>seq3028
Length=62347
Score = 120 bits (132), Expect = 7e-22
Identities = 152/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||||||||||||| | || || ||||| || || | || |||||| || ||
Sbjct 28313 CAAATTTTCGTGAAAACTTTGACGGGTAAAACCATAACGTTGGAAGTGGAAGCATCGGAT 28254
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||| || ||| ||| || || ||||| || || || || || ||||| ||
Sbjct 28253 ACGATCGAGAATGTTAAAGCAAAAATCCAAGACAAGGAGGGTATTCCACCAGACCAACAG 28194
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| ||||| ||||| || || || || ||||| | || | | |||||||| |
Sbjct 28193 CGACTGATCTTTGCCGGGAAGCAACTGGAGGATGGTCGTACGTTATCGGATTATAATATT 28134
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
|| || ||||| || || || |||| ||
Sbjct 28133 CAGAAGGAATCGACGCTTCA-CTTGGTT 28107
Score = 113 bits (124), Expect = 1e-19
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| |||||||| | || || ||||| |||||| | ||||| ||| ||| ||
Sbjct 28966 CAAATTTTTGTGAAAACATTGACGGGCAAAACAATCACCTTAGAGGTTGAAGCCTCTGAT 28907
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || ||| || ||||| ||||| ||||||||||| || || ||||||
Sbjct 28906 ACAATCGAAAATGTGAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAGCAA 28847
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||| ||||| ||
Sbjct 28846 CGTCTTATTTTCGCTGG 28830
Score = 109 bits (120), Expect = 1e-18
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| ||||||||||| || || || || ||||| | || |||||| || |||
Sbjct 29366 CAAATTTTTGTGAAAACTCTTACCGGTAAGACAATCACATTGGAAGTGGAAGCATCTGAC 29307
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| || ||| || || |||||||||||||| || || || || ||||||
Sbjct 29306 ACCATCGAGAATGTTAAAGCGAAAATCCAGGACAAAGAAGGCATTCCACCAGATCAGCAA 29247
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|| | || ||||| || ||
Sbjct 29246 CGGTTGATTTTCGCTGGTAA 29227
>seq10840
Length=643
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||||||||| || || || |||||||| || || ||||| ||| || ||
Sbjct 4 CAAATATTCGTGAAAACACTAACTGGTAAAACGATTACTCTTGAGGTAGAATCGTCTGAT 63
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || ||| || ||||| || || || || || || || || || |||
Sbjct 64 ACCATTGAGAATGTGAAAGCTAAAATTCAAGATAAGGAGGGCATTCCACCTGATCAACAA 123
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|||||||| ||||| || ||
Sbjct 124 CGACTTATTTTCGCAGGTAA 143
>seq1448
Length=39285
Score = 86.0 bits (94), Expect = 2e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || ||||| | || || || ||||| || || || || ||| ||| ||
Sbjct 34736 CAAATTTTTGTAAAAACATTAACTGGTAAGACGATTACGCTTGAAGTCGAATCCTCGGAT 34795
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| ||||||||||| || ||||| || ||||| || ||||||
Sbjct 34796 ACTATTGAAAATGTAAAAGCGAAGATTCAGGATAAGGAAGGCATACCTCCAGATCAGCAA 34855
Query 178044 CGACTTATCTTCGCCGG 178060
||| | || || || ||
Sbjct 34856 CGATTGATTTTTGCAGG 34872
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203336993078640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |