Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 105 8e-18 seq1074 89.7 6e-13 >seq1 Length=3556246 Score = 105 bits (116), Expect = 8e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 24521 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 24580 |||||||||||| || || || ||| ||||| || ||||| ||| || | ||||| | Sbjct 2737088 ATTTTCATTCACAATCCCATCGGAGGCAGCAAAGAAGGCCAAAACACGTGTAATAAAGAA 2737147 Query 24581 TTTTTCGTCTGGT--GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 24638 | ||| | ||| |||||| | |||||| ||||| || | | ||| |||||| Sbjct 2737148 TCGTTC--CGGGTCCGTTAGTCCACGCCAATCGGCCATATCCTTTGCGAGATCAACTTCT 2737205 Query 24639 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 24698 || || ||||| ||||| ||| | || ||||| | ||||| || ||| ||||| Sbjct 2737206 TCAACAGTCCAGAATGACGCCACAGCGCGCTTATAGAAGTTCCAAATATCAAAGTATTGT 2737265 Query 24699 ATTGGAAAAATAACAAATCTATTTGGATTTT 24729 || |||||||| ||||| | ||| ||||||| Sbjct 2737266 ATCGGAAAAATCACAAAGCGATTCGGATTTT 2737296 >seq1074 Length=682288 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 ||| || || || ||||| || | ||| || ||||| ||||| | || ||||||| || Sbjct 176056 TTCGAATTCATCACCCCATACGTCGTCTAAACCAGGGCATTCGTTAGGGCACATCAGTGA 176115 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| | | | || | || || || ||||| || | |||||||||||| | || ||| Sbjct 176116 CCATTTTTCATCGTTGTTGACACGCTTCATGAATAAATCAGGAATCCATAAGGCGTAAAA 176175 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 | ||||| || | | || ||| || || ||| ||| || || | || |||| Sbjct 176176 CAAATCTCGGGCACGTTCCTCTTCGGCACCGGTGTTCAATTTTAGCTCCAAAAATTCCAT 176235 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGG 54161 |||||| | ||||| |||||||| || |||| Sbjct 176236 AATATCGGCGTGCCAAGGTTCCAAATAAATGG 176267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593708530703280