Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq335 100 2e-16 >seq335 Length=1426492 Score = 100 bits (110), Expect = 2e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 || ||| |||| |||||||||||||| ||||| || || ||||||||| ||| ||| | Sbjct 750339 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTTTGCT 750398 Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 || || | ||||| |||||| | ||| || || |||| || | || ||||||||||| Sbjct 750399 TTGACATTTTCGATGGTGTCGGAAGCT-TCAACTTCGAGTGTGATAGTCTTGCCGGTCAG 750457 Query 118718 AGTTTTTACAAAAATCTGCATG 118739 || || ||||| || |||||| Sbjct 750458 CGTCTTCACAAAGATTTGCATG 750479 Score = 98.7 bits (108), Expect = 9e-16 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 || ||| |||| |||||||||||||| ||||| || || ||||||||| || || | Sbjct 751468 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 751527 Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 || || | |||| |||||| | ||| ||||| |||| || | || ||||||||||| Sbjct 751528 TTGACATTATCGATGGTGTCGGAAGCT-TCGACTTCGAGCGTAATAGTCTTGCCGGTCAG 751586 Query 118718 AGTTTTTACAAAAATCTGCATGG 118740 ||||| ||||| || ||||||| Sbjct 751587 GGTTTTGACAAAGATTTGCATGG 751609 Score = 91.5 bits (100), Expect = 1e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 |||| |||||||||||||| ||||| || || ||||||||| || || ||| || | Sbjct 750757 AGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACAT 750816 Query 118666 GTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 |||| |||||| | ||| ||||| |||| || | ||| |||||||| || || || Sbjct 750817 TATCGATGGTGTCGGAAGCT-TCGACTTCGAGCGTGATCGTCTTGCCGGTGAGCGTCTTC 750875 Query 118725 ACAAAAATCTGCAT 118738 || ||||||||||| Sbjct 750876 ACGAAAATCTGCAT 750889 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 |||| |||||||||||||| ||||| || || ||||||||| || || ||| || | Sbjct 749591 AGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACAT 749650 Query 118666 GTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 |||| ||||| | ||| ||||| |||| || | ||| |||||||| || || || Sbjct 749651 TATCGATTGTGTCGGAAGCT-TCGACTTCGAGCGTGATCGTCTTGCCGGTGAGCGTCTTC 749709 Query 118725 ACAAAAATCTGCAT 118738 || ||||||||||| Sbjct 749710 ACGAAAATCTGCAT 749723 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 ||||| |||| || ||||| || || || || || |||||||||||| || || Sbjct 751119 CCAGCAAAGATAAGCCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCC 751178 Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 || || | |||| |||||| | ||| ||||| |||| || | ||||||||||||||| Sbjct 751179 TTGACATTCTCGATGGTGTCAGAAGCT-TCGACTTCGAGCGTTATCGTTTTGCCGGTCAG 751237 Query 118718 AGTTTTTACAAAAATCTGCAT 118738 ||||| || ||||| ||||| Sbjct 751238 CGTTTTCACGAAAATTTGCAT 751258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433821089050612