Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq975 89.7 6e-13 seq347 89.7 6e-13 seq1507 84.2 3e-11 seq1076 84.2 3e-11 seq546 84.2 3e-11 seq136 84.2 3e-11 seq47 84.2 3e-11 >seq975 Length=52733 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| | |||| |||||| |||||| |||||| | ||||||||||| |||| Sbjct 29905 AAAAAATTTCTTCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 29964 Query 60117 TCACCACTATACTACCGAG 60135 | ||||||||||||||||| Sbjct 29965 TTACCACTATACTACCGAG 29983 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| | |||| |||||| |||||| |||||| | ||||||||||| |||| Sbjct 31622 AAAAAATTTCTTCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 31681 Query 60117 TCACCACTATACTACCGAG 60135 | ||||||||||||||||| Sbjct 31682 TTACCACTATACTACCGAG 31700 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| | |||| |||||| |||||| |||||| | ||||||||||| |||| Sbjct 31992 AAAAAATTTCTTCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 31933 Query 60117 TCACCACTATACTACCGAG 60135 | ||||||||||||||||| Sbjct 31932 TTACCACTATACTACCGAG 31914 >seq347 Length=214139 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| |||| | |||| |||||| |||||| |||||| | ||||||||||| |||| Sbjct 65626 AAAAATGTTCTTCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 65567 Query 60117 TCACCACTATACTACCGAG 60135 | ||||||||||||||||| Sbjct 65566 TTACCACTATACTACCGAG 65548 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| |||| | |||| |||||| |||||| |||||| | ||||||||||| |||| Sbjct 70496 AAAAATGTTCTTCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 70437 Query 60117 TCACCACTATACTACCGAG 60135 | ||||||||||||||||| Sbjct 70436 TTACCACTATACTACCGAG 70418 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| |||| | |||| |||||| |||||| |||||| | ||||||||||| |||| Sbjct 74566 AAAAATGTTCTTCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 74507 Query 60117 TCACCACTATACTACCGAG 60135 | ||||||||||||||||| Sbjct 74506 TTACCACTATACTACCGAG 74488 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| |||| | |||| |||||| |||||| |||||| | ||||||||||| |||| Sbjct 78636 AAAAATGTTCTTCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 78577 Query 60117 TCACCACTATACTACCGAG 60135 | ||||||||||||||||| Sbjct 78576 TTACCACTATACTACCGAG 78558 >seq1507 Length=370478 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| |||| |||| ||||||| ||||| |||||| | ||||||||||| |||| Sbjct 60400 AAAAATAAACTCCCCGGCCGGGAATCAAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 60459 Query 60117 TCACCACTATACTACCGAGGA 60137 | | ||||||||||||||||| Sbjct 60460 TAATCACTATACTACCGAGGA 60480 >seq1076 Length=26424 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||| | |||| |||||| |||||| |||||| | ||||||||||| |||| Sbjct 3581 AAAAAACTTCTTCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 3640 Query 60117 TCACCACTATACTACCGAG 60135 | ||||||||||||||||| Sbjct 3641 TTACCACTATACTACCGAG 3659 >seq546 Length=175763 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| |||| |||| ||||||| ||||| |||||| | ||||||||||| |||| Sbjct 18884 AAAAATAAACTCCCCGGCCGGGAATCAAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 18825 Query 60117 TCACCACTATACTACCGAGGA 60137 | | ||||||||||||||||| Sbjct 18824 TAATCACTATACTACCGAGGA 18804 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| |||| |||| ||||||| ||||| |||||| | ||||||||||| |||| Sbjct 70139 AAAAATAAACTCCCCGGCCGGGAATCAAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 70198 Query 60117 TCACCACTATACTACCGAGGA 60137 | | ||||||||||||||||| Sbjct 70199 TAATCACTATACTACCGAGGA 70219 >seq136 Length=251345 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| |||| |||| ||||||| ||||| |||||| | ||||||||||| |||| Sbjct 70706 AAAAATGAACTCCCCGGCCGGGAATCAAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 70765 Query 60117 TCACCACTATACTACCGAGGA 60137 | | ||||||||||||||||| Sbjct 70766 TAATCACTATACTACCGAGGA 70786 >seq47 Length=280773 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| |||| |||| ||||||| ||||| |||||| | ||||||||||| |||| Sbjct 262257 AAAAATAAGCTCCCCGGCCGGGAATCAAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 262198 Query 60117 TCACCACTATACTACCGAGGA 60137 | | ||||||||||||||||| Sbjct 262197 TAATCACTATACTACCGAGGA 262177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571805012865080