Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 seq919 82.4 6e-11 >seq1 Length=3556246 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| ||||| ||||| ||||| || || | || |||||||| || || Sbjct 2164727 TTACCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTG 2164786 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||||| | | | | ||||| ||||||| |||| || || |||||||| || Sbjct 2164787 GCTTTAACGTTCTCAATGGTGTCCGAGGCCTCCACTTCCAAAGTGATAGTCTTGCCAGTG 2164846 Query 45314 AGAGTCTTCACAAAGATTTGCATGTTGC 45341 |||||||||||||| |||||||| |||| Sbjct 2164847 AGAGTCTTCACAAAAATTTGCATTTTGC 2164874 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45197 CCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGC 45256 |||||||| ||||| ||||| ||||| || || | ||||||||||| || || | Sbjct 2162719 CCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTAGCC 2162778 Query 45257 TTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGA 45316 || || | | | | ||||| | || ||||||| ||||| |||||||| |||| | Sbjct 2162779 TTGACGTTCTCAATGGTGTCCGAGGCTTCAACCTCCAGAGTAATGGTCTTGCCAGTCAAA 2162838 Query 45317 GTCTTCACAAAGATTTGCATG 45337 ||||| || || ||||||||| Sbjct 2162839 GTCTTGACGAAAATTTGCATG 2162859 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45197 CCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGC 45256 |||||||| ||||| ||||| ||||| || || | ||||||||||| || || | Sbjct 2164423 CCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTAGCC 2164482 Query 45257 TTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGA 45316 || || | | | ||||| |||| || |||| ||||| |||||||| |||| | Sbjct 2164483 TTGACGTTCTCAATAGTGTCCGAGGCCTCAACTTCCAGAGTAATGGTCTTGCCAGTCAAA 2164542 Query 45317 GTCTTCACAAAGATTTGCATG 45337 ||||| || |||||||||||| Sbjct 2164543 GTCTTGACGAAGATTTGCATG 2164563 >seq919 Length=964439 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 45197 CCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGC 45256 |||||||| |||| ||||||||||||||||| | || ||||| ||| || || Sbjct 116452 CCGGCGAAGATCAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTCGCT 116511 Query 45257 TTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGA 45316 || || | | | | |||| |||| || |||| || |||||||| || |||| | Sbjct 116512 TTCACATTCTCGATGGTGTCGGATGCCTCGACTTCCAAAGTGATCGTCTTTCCGGTCAAA 116571 Query 45317 GTCTTCACAAAGATTTGCATGTTGC 45341 |||||||| || |||||||| |||| Sbjct 116572 GTCTTCACGAAAATTTGCATTTTGC 116596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395066720821981