Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq335 100 3e-16 seq919 96.9 3e-15 seq1 84.2 2e-11 >seq335 Length=1426492 Score = 100 bits (110), Expect = 3e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| ||||| ||||| || ||||| |||| |||||| | || Sbjct 750479 CATGCAAATCTTTGTGAAGACGCTGACCGGCAAGACTATCACACTCGAAGTTGAAGCTTC 750420 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| |||||| |||||| || ||| | | |||||||||| | || || || | Sbjct 750419 CGACACCATCGAAAATGTCAAAGCAAAGATTCAAG-ACAAGGAAGGAATCCCTCCGGATC 750361 Query 31311 AGCAGCGTCTAATATTCGCTGG 31332 |||||||||| || ||||| || Sbjct 750360 AGCAGCGTCTTATCTTCGCAGG 750339 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || ||||| |||||||| |||| || ||| | ||| Sbjct 749723 ATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACGCTCGAAGTCGAAGCTTCC 749664 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | || ||||||||||| | || || || ||| Sbjct 749663 GACACAATCGATAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAG 749604 Query 31313 CAGCGTCTAATATTCGCTGG 31332 |||||||| || || || || Sbjct 749603 CAGCGTCTTATCTTTGCAGG 749584 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || ||||| |||||||| |||| || ||| | ||| Sbjct 750889 ATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACGCTCGAAGTCGAAGCTTCC 750830 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | || ||||||||||| | || || || ||| Sbjct 750829 GACACCATCGATAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAG 750770 Query 31313 CAGCGTCTAATATTCGCTGG 31332 |||||||| || || || || Sbjct 750769 CAGCGTCTTATCTTTGCAGG 750750 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 31182 TTGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACG 31241 || || ||| ||||||||| || || || || ||||| ||||| || || || |||| | Sbjct 751618 TTCAAGCAACCATGCAAATCTTTGTCAAAACCCTGACCGGCAAGACTATTACGCTCGAAG 751559 Query 31242 TTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGC 31301 | ||| | ||||||| |||| | |||||| | || ||||||||||| | | Sbjct 751558 TCGAAGCTTCCGACACCATCGATAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCC 751499 Query 31302 CGCCCGACCAGCAGCGTCTAATATTCGCTGG 31332 | || || ||||||||||| || ||||| || Sbjct 751498 CTCCGGATCAGCAGCGTCTTATCTTCGCAGG 751468 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || ||||| ||||||||||| || |||| || ||| | || Sbjct 750131 ATGCAAATTTTCGTGAAAACGCTGACCGGCAAAACGATAACGCTCGAAGTCGAAGCTTCT 750072 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||| || | ||||| ||||| Sbjct 750071 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAA 750012 Query 31313 CAGCGTCTAATATTCGCTGG 31332 ||||| || || || ||||| Sbjct 750011 CAGCGCCTTATTTTTGCTGG 749992 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || ||||| ||||||||||| || |||| || ||| | || Sbjct 751258 ATGCAAATTTTCGTGAAAACGCTGACCGGCAAAACGATAACGCTCGAAGTCGAAGCTTCT 751199 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||| || | ||||| ||||| Sbjct 751198 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAA 751139 Query 31313 CAGCGTCTAATATTCGCTGG 31332 ||||| || || || ||||| Sbjct 751138 CAGCGGCTTATCTTTGCTGG 751119 >seq919 Length=964439 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| |||||| |||| || || |||||||| | || || || | Sbjct 116594 AAAATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACGATCACTTTGGAAGTCGAGGCA 116535 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || ||| || || ||| ||||||||| | || |||||| Sbjct 116534 TCCGACACCATCGAGAATGTGAAAGCGAAGATCCAGGATAAGGAAGGCATCCCTCCCGAC 116475 Query 31310 CAGCAGCGTCTAATATTCGCTGG 31332 || |||||||| || ||||| || Sbjct 116474 CAACAGCGTCTGATCTTCGCCGG 116452 >seq1 Length=3556246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| |||||| |||| ||||| || || || | || |||||| | || Sbjct 2162859 CATGCAAATTTTCGTCAAGACTTTGACTGGCAAGACCATTACTCTGGAGGTTGAAGCCTC 2162800 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || |||||||| ||| | ||||| ||||| Sbjct 2162799 GGACACCATTGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCA 2162740 Query 31312 GCAGCGTCTAATATTCGCTGG 31332 ||||||| | || ||||| || Sbjct 2162739 GCAGCGTTTGATCTTCGCCGG 2162719 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 |||||| ||||| | || ||||| ||||| | ||||| | || |||||||| ||||| Sbjct 2736838 GGTCGAGAGATTCGCTCAGGAAGTTCAAGTACCAGAGGCTCGCTGTTTTTACGGTTTTCA 2736779 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | | || || || ||| | || || ||||||||||| || ||||| || |||||||| Sbjct 2736778 AATTGCTATCGAGAACATTCACTCGGAAATGTATTCAAAGCTTATCGAAACTTACGTGAA 2736719 Query 57857 GGA 57859 || Sbjct 2736718 AGA 2736716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445756587567120