Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 104 3e-17 seq1074 87.8 2e-12 >seq1 Length=3556246 Score = 104 bits (114), Expect = 3e-17 Identities = 150/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 33968 ATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 34027 |||||||||||| || ||||| ||| ||||| || ||||| ||| || | ||||| | Sbjct 2737088 ATTTTCATTCACAATCCCATCGGAGGCAGCAAAGAAGGCCAAAACACGTGTAATAAAGAA 2737147 Query 34028 TTTTTCGTCTGGT--GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 34085 | ||| | ||| |||||| | |||||| ||||| || | | ||| |||||| Sbjct 2737148 TCGTTC--CGGGTCCGTTAGTCCACGCCAATCGGCCATATCCTTTGCGAGATCAACTTCT 2737205 Query 34086 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 34145 || || ||||| ||||| ||| | || ||||| | ||||| || ||| ||||| Sbjct 2737206 TCAACAGTCCAGAATGACGCCACAGCGCGCTTATAGAAGTTCCAAATATCAAAGTATTGT 2737265 Query 34146 ATTGGGAAAATAACAAATCTATTTGGATTT 34175 || || ||||| ||||| | ||| |||||| Sbjct 2737266 ATCGGAAAAATCACAAAGCGATTCGGATTT 2737295 >seq1074 Length=682288 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 |||||| || || ||||| || | ||| || | ||| ||||| | || ||||||| || Sbjct 176056 TTCGAATTCATCACCCCATACGTCGTCTAAACCAGGGCATTCGTTAGGGCACATCAGTGA 176115 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||| | | | || | || || || ||||| || | |||||||||||| | || ||| Sbjct 176116 CCATTTTTCATCGTTGTTGACACGCTTCATGAATAAATCAGGAATCCATAAGGCGTAAAA 176175 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 | ||||| | | | || ||| || || ||| ||| || || | || |||| Sbjct 176176 CAAATCTCGGGCACGTTCCTCTTCGGCACCGGTGTTCAATTTTAGCTCCAAAAATTCCAT 176235 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 |||||| | ||||| |||||||| || ||||| Sbjct 176236 AATATCGGCGTGCCAAGGTTCCAAATAAATGGC 176268 Score = 82.4 bits (90), Expect = 1e-10 Identities = 188/278 (68%), Gaps = 5/278 (2%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 ||||| ||| ||||||||| | ||| | |||| | || | || || || | || Sbjct 174242 TCCATGCGTGAAAATGCATTGAACTGCATTTTGCATAATTTGGGGCAGCGATGTGCAAAT 174301 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||||| |||||| ||||| || || | || || ||||||| | ||| || Sbjct 174302 TGAGCGATTGGGATTGATCAATGAACGCACCACGATCCGCGGCCATTTCGAGGATATGCT 174361 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAA-GGTTTGT 62290 | || | ||||||||| | |||||| || | ||| | | ||| | |||| || ||| Sbjct 174362 TCTGCGGAATTTCCCAGACAGTTTTGTACAGCTCTCGGA-TATGTCGCGGAATGGATTGC 174420 Query 62291 A--TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAAT 62348 | || |||||||||||| ||| | |||| |||||||| || |||||||| | Sbjct 174421 ACATTTTGAATGGATCCATTATCAGCAATAAGTTGGTTCTTGATATCGTCATTCCAAAGG 174480 Query 62349 TTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAAC 62386 || | ||| ||| | | |||||||| ||||| || Sbjct 174481 TTGATTTCGATTAGGTCCTTGAGGAGATGAGGGTTCAC 174518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629803736140080