Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1074 107 2e-18 >seq1074 Length=682288 Score = 107 bits (118), Expect = 2e-18 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 37332 CCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGG 37391 |||||||||||| || ||||| ||||| || |||| || | ||||| |||||||| || Sbjct 175182 CCACATATCATACTGAAGAATGCCTTTGCTAACTGGGGAGCCTTTATAAGTCTCATATGG 175241 Query 37392 TCCGTAAATTTT--AGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCG 37449 ||| | || ||| | ||| || | ||||||||| ||||||| || |||||| Sbjct 175242 ACCG--AGTTCGGCAGCCAATTCACATGATGCTTCTAGTGCTCCATAATAAATAGTTTCG 175299 Query 37450 AAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATA 37509 |||||||| |||| | | |||||| ||||| || |||| | ||| || || | Sbjct 175300 AAAATTTGCTTATTGAGGAGGCGTGCTTCCTCGCTGTCAAATGGAAAGCGCATTAGCTGA 175359 Query 37510 AACACATCAGCCAAACCCTGAA 37531 || |||| |||||||||| || Sbjct 175360 AAAGCATCGGCCAAACCCTAAA 175381 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 37942 AAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCAT 38001 || |||| |||||||| ||| ||| || || |||||| || ||||| || |||||| Sbjct 176060 AATTCATCACCCCATACGTCGTCTAAACCAGGGCATTCGTTAGGGCACATCAGTGACCAT 176119 Query 38002 TCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAA 38061 | |||||| || | || || | ||| ||||||||||| | |||||| || ||| ||| Sbjct 176120 TTTTCATCGTTGTTGACACGCTTCATGAATAAATCAGGAATCCATAAGGCGTAAAACAAA 176179 Query 38062 TCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATAT 38120 ||| || | | |||||| || ||| | || |||| | ||| || | || Sbjct 176180 TCTCGGGCACGTTCCTCTTCGGCACCGGTGTTCAAT-TTTAGCTCCAAAAATTCCATAAT 176238 Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTC 38164 ||| |||||||| ||||| | |||||| | | ||| || |||| Sbjct 176239 ATCGGCGTGCCAAGGTTCCAAATAAATGGCAAATGCACCCGGTC 176282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468514486597840