Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1074 96.9 5e-15 seq1 96.9 5e-15 >seq1074 Length=682288 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 |||||| || || ||||| || | ||| || ||||| ||||| | || ||||||| || Sbjct 176056 TTCGAATTCATCACCCCATACGTCGTCTAAACCAGGGCATTCGTTAGGGCACATCAGTGA 176115 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||| | | | || | || || || ||||| || | |||||||||||| | || ||| Sbjct 176116 CCATTTTTCATCGTTGTTGACACGCTTCATGAATAAATCAGGAATCCATAAGGCGTAAAA 176175 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 ||||||| || | | || ||| || || ||| ||| || || | || |||| Sbjct 176176 CAAATCTCGGGCACGTTCCTCTTCGGCACCGGTGTTCAATTTTAGCTCCAAAAATTCCAT 176235 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGC 66193 |||||| ||||| |||||||| || ||||| Sbjct 176236 AATATCGGCGTGCCAAGGTTCCAAATAAATGGC 176268 Score = 87.8 bits (96), Expect = 2e-12 Identities = 189/278 (68%), Gaps = 5/278 (2%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 ||||| ||| ||||||||| | ||| | |||| | || | || || || | || Sbjct 174242 TCCATGCGTGAAAATGCATTGAACTGCATTTTGCATAATTTGGGGCAGCGATGTGCAAAT 174301 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||||| |||||| ||||| || || | || || ||||||| | ||| || Sbjct 174302 TGAGCGATTGGGATTGATCAATGAACGCACCACGATCCGCGGCCATTTCGAGGATATGCT 174361 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA-GGTTTG- 65082 | || ||||||||||| | |||||| || | ||| | |||| | |||| || ||| Sbjct 174362 TCTGCGGAATTTCCCAGACAGTTTTGTACAGCTCTC-GGATATGTCGCGGAATGGATTGC 174420 Query 65083 -TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAAT 65141 ||| |||||||||||| ||| || |||| |||||||| || |||||||| | Sbjct 174421 ACATTTTGAATGGATCCATTATCAGCAATAAGTTGGTTCTTGATATCGTCATTCCAAAGG 174480 Query 65142 TTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 65179 || | ||| ||| | | |||||||| || || || Sbjct 174481 TTGATTTCGATTAGGTCCTTGAGGAGATGAGGGTTCAC 174518 >seq1 Length=3556246 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 36544 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 36603 |||||||||||| || || || ||| ||||| || ||||| ||| || | ||||| | Sbjct 2737088 ATTTTCATTCACAATCCCATCGGAGGCAGCAAAGAAGGCCAAAACACGTGTAATAAAGAA 2737147 Query 36604 TTTTTCGTTTGGT--GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 36661 | ||| ||| |||||| | |||||| ||||| || | | ||| |||||| Sbjct 2737148 TCGTTC--CGGGTCCGTTAGTCCACGCCAATCGGCCATATCCTTTGCGAGATCAACTTCT 2737205 Query 36662 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 36721 || || ||||| ||||| ||| | || ||||| | ||||| || ||| ||||| Sbjct 2737206 TCAACAGTCCAGAATGACGCCACAGCGCGCTTATAGAAGTTCCAAATATCAAAGTATTGT 2737265 Query 36722 ATTGGAAAAATAACAAATCTATTTTGATTTT 36752 || |||||||| ||||| | ||| |||||| Sbjct 2737266 ATCGGAAAAATCACAAAGCGATTCGGATTTT 2737296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658158311971240