Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1074 127 3e-24 seq1 95.1 2e-14 >seq1074 Length=682288 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 |||||| || || ||||| || |||||||| ||||| ||||||| ||| ||||||| || Sbjct 176056 TTCGAATTCATCACCCCATACGTCGTCTAAACCAGGGCATTCGTTAGGGCACATCAGTGA 176115 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 ||| | | |||| | || || || ||||| || | |||||||||||| | || ||| Sbjct 176116 CCATTTTTCATCGTTGTTGACACGCTTCATGAATAAATCAGGAATCCATAAGGCGTAAAA 176175 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 | ||||| || | | ||| ||| || || ||| ||| || || | || |||| Sbjct 176176 CAAATCTCGGGCACGTTCCTCTTCGGCACCGGTGTTCAATTTTAGCTCCAAAAATTCCAT 176235 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCG 80087 |||||| | ||||| |||||||| || ||||| | | |||||||| Sbjct 176236 AATATCGGCGTGCCAAGGTTCCAAATAAATGGCAAATGCACCCGGTCG 176283 >seq1 Length=3556246 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 50346 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 |||||||||||| || || || ||| ||||| || ||||| ||| || | ||||| Sbjct 2737088 ATTTTCATTCACAATCCCATCGGAGGCAGCAAAGAAGGCCAAAACACGTGTAATAAAGAA 2737147 Query 50406 TTTTTCGTTGGGT--GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCT 50463 | ||| |||| |||||| | |||||| ||||| || | | ||| |||||| Sbjct 2737148 TCGTTC--CGGGTCCGTTAGTCCACGCCAATCGGCCATATCCTTTGCGAGATCAACTTCT 2737205 Query 50464 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 50523 || || ||||| ||||| ||| | || ||||| | ||||| || ||| ||||| Sbjct 2737206 TCAACAGTCCAGAATGACGCCACAGCGCGCTTATAGAAGTTCCAAATATCAAAGTATTGT 2737265 Query 50524 ATTGGGAAAATAACAAATCTATTTGGATTT 50553 || || ||||| ||||| | ||| |||||| Sbjct 2737266 ATCGGAAAAATCACAAAGCGATTCGGATTT 2737295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718252989108040