Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1074 114 2e-20 >seq1074 Length=682288 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 |||||| || || ||||| | | |||||| ||||| ||||| || || ||||||| ||| Sbjct 176056 TTCGAATTCATCACCCCATACGTCGTCTAAACCAGGGCATTCGTTAGGGCACATCAGTGA 176115 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062 ||| | | |||| | || || || ||||| || | |||||||||||| | || ||| Sbjct 176116 CCATTTTTCATCGTTGTTGACACGCTTCATGAATAAATCAGGAATCCATAAGGCGTAAAA 176175 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 | ||||| || | | ||| ||| || || ||| ||| || || | || |||| Sbjct 176176 CAAATCTCGGGCACGTTCCTCTTCGGCACCGGTGTTCAATTTTAGCTCCAAAAATTCCAT 176235 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGC 72155 |||||| | ||||| |||||||| || ||||| Sbjct 176236 AATATCGGCGTGCCAAGGTTCCAAATAAATGGC 176268 Score = 91.5 bits (100), Expect = 2e-13 Identities = 190/278 (68%), Gaps = 5/278 (2%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 ||||| ||| ||||||||| | ||| | ||| | || | || ||||| | || Sbjct 174242 TCCATGCGTGAAAATGCATTGAACTGCATTTTGCATAATTTGGGGCAGCGATGTGCAAAT 174301 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||| || |||||| ||||| || || | || || ||||||| | ||| || Sbjct 174302 TGAGCGATTGGGATTGATCAATGAACGCACCACGATCCGCGGCCATTTCGAGGATATGCT 174361 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA-GGTTTG- 71044 | || ||||||||||| | |||||| || | ||| | |||| | |||| || ||| Sbjct 174362 TCTGCGGAATTTCCCAGACAGTTTTGTACAGCTCTC-GGATATGTCGCGGAATGGATTGC 174420 Query 71045 -TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAAT 71103 ||| |||||||||||| ||| ||||||| || ||||| || |||||||| | Sbjct 174421 ACATTTTGAATGGATCCATTATCAGCAATAAGTTGGTTCTTGATATCGTCATTCCAAAGG 174480 Query 71104 TTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAAC 71141 || | ||| ||| | | ||||||||||| || || Sbjct 174481 TTGATTTCGATTAGGTCCTTGAGGAGATGAGGGTTCAC 174518 Score = 89.7 bits (98), Expect = 7e-13 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 71775 CTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 71834 |||||| || || ||||| ||||| || |||| ||||||| |||||||| || || || Sbjct 175843 CTTGATTGTACCCAAATTCTGTTGGTTGGACTTTCTGTTACAAGCATCCTTGTAGAGCAT 175902 Query 71835 AAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTT-TCCAGACGACTCGAGCCT 71893 | ||||||||||||||||||| || || ||||| |||| |||| || | ||||| | Sbjct 175903 ATACGGAGTACCAGTTTCAATTTGCGACGTGATAAT-GCTTCTCCACACCTCACGAGCAT 175961 Query 71894 T 71894 | Sbjct 175962 T 175962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671124426548360