Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq335 203 5e-48 seq1130 131 3e-26 seq945 127 3e-25 seq779 127 3e-25 seq963 122 1e-23 seq557 122 1e-23 seq125 116 6e-22 seq907 113 7e-21 seq1207 98.7 2e-16 >seq335 Length=1426492 Score = 203 bits (224), Expect = 5e-48 Identities = 189/240 (79%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || ||||||||||| ||||| |||||||||||||||||||| ||||||||||| Sbjct 460784 TCTTCGCGACAACATCCAAGGCATCACGAAGCCAGCTATCCGTCGTCTCGCTCGTCGTGG 460725 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||| ||||| |||| |||||| |||| ||||||| ||| | || ||||| ||| Sbjct 460724 AGGAGTGAAGCGCATCTCCGGATTGATCTACGAAGAGACTCGCGGAGTGCTGAAGGGCTT 460665 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| | | ||| |||| |||||| || ||| ||||||||||| || || || || || Sbjct 460664 CCTGGAAAACGTGATCCGCGATGCTGTCACCTACACCGAGCACGCCAAGCGCAAAACCGT 460605 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| ||||||| |||||||||| |||| || ||||| | | ||||||| || || Sbjct 460604 CACCGCCATGGACGTCGTCTATGCTCTGAAGCGCCAAGGAAGAACTCTTTATGGCTTCGG 460545 Score = 199 bits (220), Expect = 6e-47 Identities = 188/240 (78%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || ||||||||||| || || |||||||||||||||||||| ||||||||||| Sbjct 517869 TCTTCGCGACAACATCCAAGGCATTACGAAGCCAGCTATCCGTCGTCTCGCTCGTCGTGG 517810 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||| ||||| |||| |||||| |||| ||||||| ||| | || ||||| ||| Sbjct 517809 AGGAGTGAAGCGCATCTCCGGATTGATCTACGAAGAGACTCGCGGAGTGCTGAAGGGCTT 517750 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| | ||| |||| |||||| || ||| ||||||||||| || || ||||| || Sbjct 517749 CCTGGAACACGTGATCCGCGATGCTGTCACCTACACCGAGCACGCCAAGCGCAAGACCGT 517690 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| ||||||| |||||||||| |||| || ||||| | | ||||||| || || Sbjct 517689 CACCGCCATGGACGTCGTCTATGCTCTGAAGCGCCAAGGAAGAACTCTTTATGGCTTCGG 517630 >seq1130 Length=607531 Score = 131 bits (144), Expect = 3e-26 Identities = 104/125 (83%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | ||||||||| || |||||||||||||| ||||| ||||| Sbjct 589247 CGCGAAGCGTCATCGTAAAGTTCTTCGAGACAATATCCAAGGAATCACAAAGCCCGCTAT 589188 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| || || ||||| || || ||| ||||||| || |||||||||||| Sbjct 589187 CCGTCGTCTGGCCCGCCGCGGTGGTGTTAAACGTATCTCTGGTTTAATCTATGAAGAGAC 589128 Query 16552 TCGTG 16556 |||| Sbjct 589127 ACGTG 589123 >seq945 Length=62300 Score = 127 bits (140), Expect = 3e-25 Identities = 112/137 (82%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||| | | | || || |||||||||||||||||||||||||| |||| Sbjct 53695 CGCCAAGCGCCATCGTA-AGGTATTGCGTGATAACATCCAAGGAATCACCAAGCCCGCTA 53753 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| || || ||||| ||||||||| |||||||| | |||| || |||| Sbjct 53754 TCCGTCGTCTGGCCCGCCGAGGTGGTGTCAAGCGTATCTCTGGACTCATCTACGAGGAGA 53813 Query 16551 TTCGTGATGTTTTGAAG 16567 ||||| ||| | ||| Sbjct 53814 CTCGTGGAGTTCTCAAG 53830 >seq779 Length=1259495 Score = 127 bits (140), Expect = 3e-25 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | | || |||||||||||||||||||||||||| || ||| Sbjct 523610 GCCAAGCGCCATCGCAAAGTGTTGCGTGATAACATCCAAGGAATCACCAAGCCCGCCATC 523669 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || || ||||| ||||||||| |||||||| | |||| || |||| | Sbjct 523670 CGTCGTCTGGCCCGCCGAGGTGGTGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACT 523729 Query 16553 CGTGATGTTTTGAAG 16567 |||| ||| | ||| Sbjct 523730 CGTGGAGTTCTCAAG 523744 Score = 127 bits (140), Expect = 3e-25 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | | || |||||||||||||||||||||||||| || ||| Sbjct 529445 GCCAAGCGCCATCGCAAAGTGTTGCGTGATAACATCCAAGGAATCACCAAGCCCGCCATC 529386 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || || ||||| ||||||||| |||||||| | |||| || |||| | Sbjct 529385 CGTCGTCTGGCCCGCCGAGGTGGTGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACT 529326 Query 16553 CGTGATGTTTTGAAG 16567 |||| ||| | ||| Sbjct 529325 CGTGGAGTTCTCAAG 529311 Score = 125 bits (138), Expect = 1e-24 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | | || |||||||||||||||||||||||||| || ||| Sbjct 537353 GCCAAGCGCCATCGCAAAGTGTTGCGTGATAACATCCAAGGAATCACCAAGCCCGCCATC 537294 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || || ||||| ||||||||| |||||||| | |||| || |||| | Sbjct 537293 CGTCGTCTGGCCCGCCGAGGTGGTGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACT 537234 Query 16553 CGTG 16556 |||| Sbjct 537233 CGTG 537230 Score = 125 bits (138), Expect = 1e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | | || |||||||||||||||||||||||||| || ||| Sbjct 694297 GCCAAGCGCCATCGCAAAGTGTTGCGTGATAACATCCAAGGAATCACCAAGCCCGCCATC 694356 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || || || ||||| ||||||||| |||||||| | |||| || |||| | Sbjct 694357 CGTCGTCTAGCCCGCCGAGGTGGTGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACT 694416 Query 16553 CGTGATGTTTTGAA 16566 |||| || ||||| Sbjct 694417 CGTGCAGTGTTGAA 694430 >seq963 Length=907533 Score = 122 bits (134), Expect = 1e-23 Identities = 106/129 (82%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||||| | |||| || || ||||||||||||||||||||||||||||| Sbjct 6205 GCCAAGCGTCATCGCAAAG-TCTTGCGTGACAACATCCAAGGAATCACCAAGCCAGCTAT 6147 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| || ||||| ||||||| | |||| || || | Sbjct 6146 CCGCCGTCTCGCTCGTCGTGGTGGTGTGAAGCGAATCTCTGGTCTCATCTACGAGGAAAC 6087 Query 16552 TCGTGATGT 16560 ||| | ||| Sbjct 6086 TCGCGGTGT 6078 >seq557 Length=1357928 Score = 122 bits (134), Expect = 1e-23 Identities = 106/129 (82%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGA-TCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||||| | ||| | || || ||||||||||||||||||||||||||||| Sbjct 223175 GCCAAGCGTCATCGCAAAGTCT-TGCGTGACAACATCCAAGGAATCACCAAGCCAGCTAT 223233 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| || ||||| ||||||| | |||| || || | Sbjct 223234 CCGCCGTCTCGCTCGTCGTGGTGGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAAAC 223293 Query 16552 TCGTGATGT 16560 ||| | ||| Sbjct 223294 TCGCGGTGT 223302 >seq125 Length=258542 Score = 116 bits (128), Expect = 6e-22 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | ||||| || |||||||| || || ||||||||||| ||| Sbjct 58252 GCCAAGCGCCATCGCAAAGTGCTTCGTGACAACATCCAGGGTATTACCAAGCCAGCCATC 58193 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||| || ||||| | |||||| | |||| ||||| | | Sbjct 58192 CGTCGTCTCGCTCGTCGTGGTGGTGTGAAGCGCATTTCTGGACTCATCTACGAAGAAACT 58133 Query 16553 CGTG 16556 |||| Sbjct 58132 CGTG 58129 >seq907 Length=79662 Score = 113 bits (124), Expect = 7e-21 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | || ||||| ||||||||||||||||||||||| || ||| Sbjct 45122 GCCAAGCGCCATCGCAAAGTGCTCCGAGACAACATCCAAGGAATCACCAAGCCCGCAATC 45063 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| |||||||| || ||||| |||||||| | |||| || || | | Sbjct 45062 CGCCGTCTCGCTCGCCGTGGTGGTGTAAAGCGCATCTCTGGACTCATCTACGAGGAAACT 45003 Query 16553 CG 16554 || Sbjct 45002 CG 45001 >seq1207 Length=2135401 Score = 98.7 bits (108), Expect = 2e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| | || || || |||||||| || ||||||||||| ||||| Sbjct 599617 CGCCAAGCGCCATCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCTAT 599558 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||| ||| ||||||| || || || |||||||| |||| || | |||| ||||||| Sbjct 599557 CCGCCGTTTGGCTCGACGAGGCGGTGTCAAGCGCATCTCCGGGCTCATCTACGAAGAGA 599499 Score = 80.6 bits (88), Expect = 4e-11 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16566 AGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTA 16625 || ||||||| ||| ||| |||| || || || ||| ||||||||| || || | Sbjct 599303 AGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACTGCGAGCACGCCAAGCGCA 599244 Query 16626 AGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATG 16685 |||||||||| ||||||| | ||||| || | || ||||||||||||| | || | Sbjct 599243 AGACTGTCACTGCCATGGACGTGGTCTACGCCCTCAAGCGTCAAGGCCGTACTCTCTACG 599184 Query 16686 GTTTTGGAAGTTAA 16699 |||| ||| | ||| Sbjct 599183 GTTTCGGAGGCTAA 599170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073589905373