Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 111 2e-19 seq1074 96.9 4e-15 >seq1 Length=3556246 Score = 111 bits (122), Expect = 2e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 ||| |||||||||||| || || || ||| ||||| || ||||| ||| || | |||| Sbjct 2737084 CCAGATTTTCATTCACAATCCCATCGGAGGCAGCAAAGAAGGCCAAAACACGTGTAATAA 2737143 Query 33746 AATATTTTTCGTCTGGT--GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 33803 | || ||| | ||| |||||| | |||||| ||||| || | | ||| || Sbjct 2737144 AGAATCGTTC--CGGGTCCGTTAGTCCACGCCAATCGGCCATATCCTTTGCGAGATCAAC 2737201 Query 33804 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATA 33863 |||||| || ||||| ||||| ||| | || ||||| | |||||| || ||| | || Sbjct 2737202 TTCTTCAACAGTCCAGAATGACGCCACAGCGCGCTTATAGAAGTTCCAAATATCAAAGTA 2737261 Query 33864 TTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 ||| || || ||||| ||||| | ||| |||||| Sbjct 2737262 TTGTATCGGAAAAATCACAAAGCGATTCGGATTT 2737295 >seq1074 Length=682288 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 |||||| || || ||||| || | ||| || ||||| ||||| | || ||||||| || Sbjct 176056 TTCGAATTCATCACCCCATACGTCGTCTAAACCAGGGCATTCGTTAGGGCACATCAGTGA 176115 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||| | | | || | || || || ||||| || | |||||||||||| | || ||| Sbjct 176116 CCATTTTTCATCGTTGTTGACACGCTTCATGAATAAATCAGGAATCCATAAGGCGTAAAA 176175 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 | ||||| || | | || ||| || || ||| ||| || || | || |||| Sbjct 176176 CAAATCTCGGGCACGTTCCTCTTCGGCACCGGTGTTCAATTTTAGCTCCAAAAATTCCAT 176235 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 |||||| | ||||| |||||||| || ||||| Sbjct 176236 AATATCGGCGTGCCAAGGTTCCAAATAAATGGC 176268 Score = 87.8 bits (96), Expect = 2e-12 Identities = 189/278 (68%), Gaps = 5/278 (2%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 ||||| ||| ||||||||| | ||| | |||| | || | || || || | || Sbjct 174242 TCCATGCGTGAAAATGCATTGAACTGCATTTTGCATAATTTGGGGCAGCGATGTGCAAAT 174301 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||||| |||||| ||||| || || | || || ||||||| | ||| || Sbjct 174302 TGAGCGATTGGGATTGATCAATGAACGCACCACGATCCGCGGCCATTTCGAGGATATGCT 174361 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA-GGTTTG- 62238 | || ||||||||||| | |||||| || | ||| | |||| | |||| || ||| Sbjct 174362 TCTGCGGAATTTCCCAGACAGTTTTGTACAGCTCTC-GGATATGTCGCGGAATGGATTGC 174420 Query 62239 -TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAAT 62297 ||| |||||||||||| ||| || |||| |||||||| || |||||||| | Sbjct 174421 ACATTTTGAATGGATCCATTATCAGCAATAAGTTGGTTCTTGATATCGTCATTCCAAAGG 174480 Query 62298 TTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 62335 || | ||| ||| | | |||||||| || || || Sbjct 174481 TTGATTTCGATTAGGTCCTTGAGGAGATGAGGGTTCAC 174518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622933487374760