Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq963 100 2e-16 seq919 98.7 9e-16 seq813 98.7 9e-16 >seq963 Length=907533 Score = 100 bits (110), Expect = 2e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 23983 CAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042 ||| ||||||||| | || || || ||||| ||||| || | || || | ||||||| Sbjct 28243 CAAGCAAAATGCAGATCTTCGTCAAGACATTGACTGGCAAGACCATCACTTTGGAAGTCG 28302 Query 24043 AGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 |||| | |||||||||||| | || || ||||| |||||||||||||| |||| Sbjct 28303 AGGCTAGCGACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTC 28362 Query 24103 CCGATCAACAGAGACTGATTTACGGCGG 24130 | ||||| ||| |||| |||| || ||| Sbjct 28363 CGGATCAGCAGCGACTTATTTTCGCCGG 28390 >seq919 Length=964439 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 |||||||||| | || || || || || || ||||| |||| || | ||||||||||| Sbjct 116595 CAAAATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACGATCACTTTGGAAGTCGAGGC 116536 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||||||||||||| | || ||| ||||| || || |||||||| |||||||| Sbjct 116535 ATCCGACACCATCGAGAATGTGAAAGCGAAGATCCAGGATAAGGAAGGCATCCCTCCCGA 116476 Query 24107 TCAACAGAGACTGATTTACGGCGG 24130 |||||| | ||||| | || ||| Sbjct 116475 CCAACAGCGTCTGATCTTCGCCGG 116452 >seq813 Length=135908 Score = 98.7 bits (108), Expect = 9e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 || ||||||||| | || || || ||||| ||||| || | || || | |||||||| Sbjct 49552 AAGCAAAATGCAGATCTTCGTCAAGACATTGACTGGCAAGACCATCACTTTGGAAGTCGA 49611 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 ||| | |||||||||||| | || || ||||| |||||||||||||| ||||| Sbjct 49612 GGCTAGCGACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCC 49671 Query 24104 CGATCAACAGAGACTGATTTACGGCGG 24130 ||||| ||| |||| |||| || ||| Sbjct 49672 GGATCAGCAGCGACTTATTTTCGCCGG 49698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429926772632955