Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1 105 8e-18 seq1074 91.5 2e-13 >seq1 Length=3556246 Score = 105 bits (116), Expect = 8e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 33047 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 33106 |||||||||||| || || || ||| ||||| || ||||| ||| || | ||||| | Sbjct 2737088 ATTTTCATTCACAATCCCATCGGAGGCAGCAAAGAAGGCCAAAACACGTGTAATAAAGAA 2737147 Query 33107 TTTTTCGTCTGGT--GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 33164 | ||| | ||| |||||| | |||||| ||||| || | | ||| |||||| Sbjct 2737148 TCGTTC--CGGGTCCGTTAGTCCACGCCAATCGGCCATATCCTTTGCGAGATCAACTTCT 2737205 Query 33165 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 33224 || || ||||| ||||| ||| | || ||||| | ||||| || ||| ||||| Sbjct 2737206 TCAACAGTCCAGAATGACGCCACAGCGCGCTTATAGAAGTTCCAAATATCAAAGTATTGT 2737265 Query 33225 ATTGGAAAAATAACAAATCTATTTGGATTTT 33255 || |||||||| ||||| | ||| ||||||| Sbjct 2737266 ATCGGAAAAATCACAAAGCGATTCGGATTTT 2737296 >seq1074 Length=682288 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 |||||| || || ||||| || | ||| | ||||| ||||| | || ||||||| || Sbjct 176056 TTCGAATTCATCACCCCATACGTCGTCTAAACCAGGGCATTCGTTAGGGCACATCAGTGA 176115 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| | | | || | || || || ||||| || | |||||||||||| | || ||| Sbjct 176116 CCATTTTTCATCGTTGTTGACACGCTTCATGAATAAATCAGGAATCCATAAGGCGTAAAA 176175 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 | ||||| || | | || ||| || || ||| ||| || || | || |||| Sbjct 176176 CAAATCTCGGGCACGTTCCTCTTCGGCACCGGTGTTCAATTTTAGCTCCAAAAATTCCAT 176235 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 |||||| | ||||| |||||||| || ||||| Sbjct 176236 AATATCGGCGTGCCAAGGTTCCAAATAAATGGC 176268 Score = 82.4 bits (90), Expect = 1e-10 Identities = 188/278 (68%), Gaps = 5/278 (2%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 ||||| ||| ||||||||| | ||| | |||| | || | || || || | || Sbjct 174242 TCCATGCGTGAAAATGCATTGAACTGCATTTTGCATAATTTGGGGCAGCGATGTGCAAAT 174301 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | ||||| |||||| ||||| || || | || || ||||||| | || || Sbjct 174302 TGAGCGATTGGGATTGATCAATGAACGCACCACGATCCGCGGCCATTTCGAGGATATGCT 174361 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA-GGTTTG- 62093 | || ||||||||||| | |||||| || | ||| | |||| | |||| || ||| Sbjct 174362 TCTGCGGAATTTCCCAGACAGTTTTGTACAGCTCTC-GGATATGTCGCGGAATGGATTGC 174420 Query 62094 -TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAAT 62152 ||| |||||||||||| ||| || |||| |||||||| || |||||||| | Sbjct 174421 ACATTTTGAATGGATCCATTATCAGCAATAAGTTGGTTCTTGATATCGTCATTCCAAAGG 174480 Query 62153 TTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 62190 || | ||| ||| | | |||||||| || || || Sbjct 174481 TTGATTTCGATTAGGTCCTTGAGGAGATGAGGGTTCAC 174518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633618052175600