Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq875 86.0 5e-12 seq919 84.2 2e-11 seq335 82.4 7e-11 >seq875 Length=1085948 Score = 86.0 bits (94), Expect = 5e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| |||||||| || | ||||| ||||||| ||| || Sbjct 311711 AATGCAAATCTTTGTGAAGACATTGACCGGGAAGACGATCACGCTCGAAGTTGAGGCGAG 311652 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || ||||| | || | ||| ||||| ||||| || || || || | Sbjct 311651 CGACACCATTGATAATGTGAAGGCTAAGATTCAA-GACAAGGAAGGCATCCCGCCAGATC 311593 Query 25117 AACAGCGGATTATTTTTGCCGGCAAA 25142 | ||||| | ||||||||||| ||| Sbjct 311592 AGCAGCGTCTCATTTTTGCCGGTAAA 311567 >seq919 Length=964439 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || |||||||||||||| || | ||||| | ||||| ||| | || Sbjct 116592 AATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACGATCACTTTGGAAGTCGAGGCATC 116533 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| |||| || ||| || || ||||| || || || ||||| Sbjct 116532 CGACACCATCGAGAATGTGAAAGCGAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCA 116473 Query 25118 ACAGCGGATTATTTTTGCCGG 25138 |||||| | || || ||||| Sbjct 116472 ACAGCGTCTGATCTTCGCCGG 116452 >seq335 Length=1426492 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || ||||||| ||| | || || ||||||| || | ||| Sbjct 750131 ATGCAAATTTTCGTGAAAACGCTGACCGGCAAAACGATAACGCTCGAAGTCGAAGCTTCT 750072 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || || |||||| Sbjct 750071 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAA 750012 Query 25119 CAGCGGATTATTTTTGCCGG 25138 ||||| |||||||||| || Sbjct 750011 CAGCGCCTTATTTTTGCTGG 749992 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || ||||||| ||| | || || ||||||| || | ||| Sbjct 751258 ATGCAAATTTTCGTGAAAACGCTGACCGGCAAAACGATAACGCTCGAAGTCGAAGCTTCT 751199 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || || |||||| Sbjct 751198 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAA 751139 Query 25119 CAGCGGATTATTTTTGCCGG 25138 |||||| |||| ||||| || Sbjct 751138 CAGCGGCTTATCTTTGCTGG 751119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433318699833215