Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq875 95.1 1e-14 seq335 95.1 1e-14 seq919 87.8 2e-12 seq1074 82.4 6e-11 >seq1 Length=3556246 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || ||||||||||||| || | | Sbjct 2163314 ATGCAAATCTTCGTCAAGACACTCACCGGAAAGACTATCACTCTTGAAGTTGAGGCGTCT 2163255 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | ||||| || ||||||||||||||||||||||| ||||| || Sbjct 2163254 GACACCATTGAGAACGTCAAAGCCAAGATTCAAGACAAGGAGGGTATTCCGCCCGACCAG 2163195 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || ||| | || |||||||| || Sbjct 2163194 CAGCGTTTGATCTTTGCCGGTAA 2163172 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || || |||||||||| ||||| | || Sbjct 2163720 ATGCAAATCTTCGTCAAGACCTTGACTGGAAAGACTATCACTCTTGAGGTGGAGGCGTCC 2163661 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | ||||| || |||||||||||||||||||| || ||||| || Sbjct 2163660 GACACCATTGAGAACGTCAAAGCCAAGATTCAAGACAAGGAGGGTATCCCGCCCGACCAG 2163601 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || | || |||||||| Sbjct 2163600 CAGCGCTTGATCTTTGCCGG 2163581 >seq875 Length=1085948 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| ||||| || || || ||||| || ||| |||| || ||||| || | Sbjct 311713 AAAATGCAAATCTTTGTGAAGACATTGACCGGGAAGACGATCACGCTCGAAGTTGAGGCG 311654 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| ||| | || || | || || |||||||||||||| || || || || ||| Sbjct 311653 AGCGACACCATTGATAATGTGAAGGCTAAGATTCAAGACAAGGAAGGCATCCCGCCAGAT 311594 Query 22336 CAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||| || |||||||| ||| Sbjct 311593 CAGCAGCGTCTCATTTTTGCCGGTAAA 311567 >seq335 Length=1426492 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| || || |||| || ||||| ||| | || Sbjct 750478 ATGCAAATCTTTGTGAAGACGCTGACCGGCAAGACTATCACACTCGAAGTTGAAGCTTCC 750419 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| ||| |||||||||||||| || || || || ||||| Sbjct 750418 GACACCATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGAATCCCTCCGGATCAG 750359 Query 22339 CAACGTCTTATATTTGCCGG 22358 || |||||||| || || || Sbjct 750358 CAGCGTCTTATCTTCGCAGG 750339 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | ||||| |||||| | || || ||||| ||| | | Sbjct 750131 ATGCAAATTTTCGTGAAAACGCTGACCGGCAAAACGATAACGCTCGAAGTCGAAGCTTCT 750072 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || |||||||||||||| || || || || ||| Sbjct 750071 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAA 750012 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || ||||| ||||| || Sbjct 750011 CAGCGCCTTATTTTTGCTGG 749992 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || ||| |||| || ||||| ||| | || Sbjct 750889 ATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACGCTCGAAGTCGAAGCTTCC 750830 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || ||||||||||| || || || || ||||| Sbjct 750829 GACACCATCGATAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAG 750770 Query 22339 CAACGTCTTATATTTGCCGG 22358 || |||||||| ||||| || Sbjct 750769 CAGCGTCTTATCTTTGCAGG 750750 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | ||||| |||||| | || || ||||| ||| | | Sbjct 751258 ATGCAAATTTTCGTGAAAACGCTGACCGGCAAAACGATAACGCTCGAAGTCGAAGCTTCT 751199 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || |||||||||||||| || || || || ||| Sbjct 751198 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAA 751139 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || ||||| ||||| || Sbjct 751138 CAGCGGCTTATCTTTGCTGG 751119 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || ||| |||| || ||||| ||| | || Sbjct 749723 ATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACGCTCGAAGTCGAAGCTTCC 749664 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| || || ||||||||||| || || || || ||||| Sbjct 749663 GACACAATCGATAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAG 749604 Query 22339 CAACGTCTTATATTTGCCGG 22358 || |||||||| ||||| || Sbjct 749603 CAGCGTCTTATCTTTGCAGG 749584 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | ||||| || || | || || ||||| ||| | || Sbjct 751607 ATGCAAATCTTTGTCAAAACCCTGACCGGCAAGACTATTACGCTCGAAGTCGAAGCTTCC 751548 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || ||||||||||| || || || || ||||| Sbjct 751547 GACACCATCGATAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAG 751488 Query 22339 CAACGTCTTATATTTGCCGG 22358 || |||||||| || || || Sbjct 751487 CAGCGTCTTATCTTCGCAGG 751468 >seq919 Length=964439 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| || || ||||| ||||| || ||| ||||| | ||||| || | Sbjct 116594 AAAATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACGATCACTTTGGAAGTCGAGGCA 116535 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | || || | ||| || || || || ||||| || || || ||||| Sbjct 116534 TCCGACACCATCGAGAATGTGAAAGCGAAGATCCAGGATAAGGAAGGCATCCCTCCCGAC 116475 Query 22336 CAACAACGTCTTATATTTGCCGG 22358 ||||| ||||| || || ||||| Sbjct 116474 CAACAGCGTCTGATCTTCGCCGG 116452 >seq1074 Length=682288 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 130017 GACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCT 130076 ||| || ||||| || ||||| || | ||| | |||||| ||||||||||| || | Sbjct 176134 GACACGCTTCATGAATAAATCAGGAATCCATAAGGCGTAAAACAAATCTCGGGCACGTTC 176193 Query 130077 ATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGG 130136 || |||||||| |||| ||| || || | || || ||| ||||||||||| || Sbjct 176194 CTCTTCGGCACCGGTGTTCAATTTTAGCTCCAAAAATTCCATAATATCGGCGTGCCAAGG 176253 Query 130137 TTCAACATAAATTGCCATTGCGCCC 130161 ||| | |||||| || | ||| ||| Sbjct 176254 TTCCAAATAAATGGCAAATGCACCC 176278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419718991718965