Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq963 118 2e-21 seq919 118 2e-21 seq813 118 2e-21 seq1 116 7e-21 seq1052 105 1e-17 seq335 95.1 2e-14 seq875 89.7 9e-13 >seq963 Length=907533 Score = 118 bits (130), Expect = 2e-21 Identities = 116/147 (79%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| || |||| || || || || ||||||||||| ||||| || ||||| ||| Sbjct 28390 CCGGCGAAAATAAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCC 28331 Query 68382 TTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || ||||||||||| ||| | || |||||||| |||||||| || || || | Sbjct 28330 TTCACATTTTCGATGGTGTC-GCTAGCCTCGACTTCCAAAGTGATGGTCTTGCCAGTCAA 28272 Query 68441 GGTCTTGACGAATATCTGCATTATGCT 68467 ||||||||||| ||||||||| |||| Sbjct 28271 TGTCTTGACGAAGATCTGCATTTTGCT 28245 >seq919 Length=964439 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| || || | ||||||||||| || ||||||||||| || || ||||| || Sbjct 116452 CCGGCGAAGATCAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTCGCT 116511 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || |||||||||||| | || || |||||||| ||||| || ||||| || | Sbjct 116512 TTCACATTCTCGATGGTGTCGGATGCCTCGACTTCCAAAGTGATCGTCTTTCCGGTCAAA 116571 Query 68442 GTCTTGACGAATATCTGCATTATGC 68466 ||||| ||||| || |||||| ||| Sbjct 116572 GTCTTCACGAAAATTTGCATTTTGC 116596 >seq813 Length=135908 Score = 118 bits (130), Expect = 2e-21 Identities = 116/147 (79%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| || |||| || || || || ||||||||||| ||||| || ||||| ||| Sbjct 49698 CCGGCGAAAATAAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCC 49639 Query 68382 TTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || ||||||||||| ||| | || |||||||| |||||||| || || || | Sbjct 49638 TTCACATTTTCGATGGTGTC-GCTAGCCTCGACTTCCAAAGTGATGGTCTTGCCAGTCAA 49580 Query 68441 GGTCTTGACGAATATCTGCATTATGCT 68467 ||||||||||| ||||||||| |||| Sbjct 49579 TGTCTTGACGAAGATCTGCATTTTGCT 49553 >seq1 Length=3556246 Score = 116 bits (128), Expect = 7e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| ||||| || || | | || |||||||| ||||| || ||||||||||||||||| Sbjct 2163171 CTTACCGGCAAAGATCAAACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCTTGAATCTT 2163230 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 || |||||| ||| |||||||| | | || ||||| | ||||| || ||||| || Sbjct 2163231 GGCTTTGACGTTCTCAATGGTGTCAGACGCCTCAACTTCAAGAGTGATAGTCTTTCCGGT 2163290 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 ||| ||||||||||| || ||||| Sbjct 2163291 GAGTGTCTTGACGAAGATTTGCAT 2163314 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| |||||||| || | | || ||||| || || ||||| ||||||||||| ||||| Sbjct 2163884 CTTACCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTT 2163943 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||||||| ||| || ||||| | | ||| ||||||| || ||||| || || || Sbjct 2163944 AGCCTTGACGTTCTCAATTGTGTCCGAGGCTTCAACTTCCAGAGTAATGGTCTTGCCAGT 2164003 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||||| ||||| Sbjct 2164004 CAAAGTCTTGACGAATATTTGCAT 2164027 Score = 111 bits (122), Expect = 3e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| |||||||| || | | || ||||| || || ||||||||||||||||| ||||| Sbjct 2164726 CTTACCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTT 2164785 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 || || ||| ||| |||||||| | | || |||||||| ||||| || || || || Sbjct 2164786 GGCTTTAACGTTCTCAATGGTGTCCGAGGCCTCCACTTCCAAAGTGATAGTCTTGCCAGT 2164845 Query 68438 GAGGGTCTTGACGAATATCTGCATTATGC 68466 ||| ||||| || || || |||||| ||| Sbjct 2164846 GAGAGTCTTCACAAAAATTTGCATTTTGC 2164874 Score = 104 bits (114), Expect = 4e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| || | | || ||||| || || ||||| ||||||||||| ||||| ||| Sbjct 2162719 CCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTAGCC 2162778 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||| ||| |||||||| | | ||| || |||| || ||||| || || || | Sbjct 2162779 TTGACGTTCTCAATGGTGTCCGAGGCTTCAACCTCCAGAGTAATGGTCTTGCCAGTCAAA 2162838 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||||||||| || ||||| Sbjct 2162839 GTCTTGACGAAAATTTGCAT 2162858 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || | | || |||||||| || || || ||||||||||||||||| || Sbjct 2163581 CCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCTTGAATCTTGGCT 2163640 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||| ||| |||||||| | | || || || | ||||| || ||||| || | | Sbjct 2163641 TTGACGTTCTCAATGGTGTCGGACGCCTCCACCTCAAGAGTGATAGTCTTTCCAGTCAAG 2163700 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||||||||| || ||||| Sbjct 2163701 GTCTTGACGAAGATTTGCAT 2163720 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| || | | || ||||| || || ||||| ||||||||||| ||||| ||| Sbjct 2164423 CCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTAGCC 2164482 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||| ||| || ||||| | | || ||||||| || ||||| || || || | Sbjct 2164483 TTGACGTTCTCAATAGTGTCCGAGGCCTCAACTTCCAGAGTAATGGTCTTGCCAGTCAAA 2164542 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||||||||| || ||||| Sbjct 2164543 GTCTTGACGAAGATTTGCAT 2164562 >seq1052 Length=697068 Score = 105 bits (116), Expect = 1e-17 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||| ||| | ||| | || ||||| |||||||||||||||||||| | || || ||| Sbjct 2533 CCGGTGAAAACAAGTTTCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTCGATTTTGGCC 2474 Query 68382 TTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 ||||| | ||||||| || ||| | || |||||||| |||| || || ||||| | Sbjct 2473 TTGACATTCACGATGGTCTC-GCTAGCCTCGACTTCCAAAGTGAGAGTCTTGCCCGTCAA 2415 Query 68441 GGTCTTGACGAATATCTGCATTATG 68465 ||||||||||| ||||||||| || Sbjct 2414 AGTCTTGACGAAGATCTGCATTTTG 2390 Score = 105 bits (116), Expect = 1e-17 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||| ||| | |||| || ||||| |||||||||||||||||||| | || || ||| Sbjct 3714 CCGGTGAAAACAAGTCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTCGATTTTGGCC 3655 Query 68382 TTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 ||||| ||||||| || ||| | || |||||||| ||||| || || || || | Sbjct 3654 TTGACATTGACGATGGTCTC-GCTAGCCTCGACTTCCAAAGTGATAGTCTTGCCGGTCAA 3596 Query 68441 GGTCTTGACGAATATCTGCATTATGCT 68467 ||||||||||| ||||||||| |||| Sbjct 3595 AGTCTTGACGAAGATCTGCATTTTGCT 3569 >seq335 Length=1426492 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | |||||||| || || || || ||||||||||| ||||| ||| Sbjct 749992 CCAGCAAAAATAAGGCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCC 750051 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| |||||||||||| | | ||| ||||| | || || ||||| || || || Sbjct 750052 TTGACATTCTCGATGGTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCAGC 750111 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || ||||| || ||||| Sbjct 750112 GTTTTCACGAAAATTTGCAT 750131 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || || | || || || || || || ||||||||||||||||||||||| Sbjct 750339 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTTTGCT 750398 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| ||||||||||| | | ||| ||||| | ||||| || || || || || Sbjct 750399 TTGACATTTTCGATGGTGTCGGAAGCTTCAACTTCGAGTGTGATAGTCTTGCCGGTCAGC 750458 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| Sbjct 750459 GTCTTCACAAAGATTTGCAT 750478 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | || || || || || || |||||||||||||| ||||| || Sbjct 750750 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 750809 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| ||||||||||| | | ||| ||||| | ||||| || || || ||||| Sbjct 750810 TTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGC 750869 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| ||||| |||||||| Sbjct 750870 GTCTTCACGAAAATCTGCAT 750889 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | |||||||| || || || || ||||||||||| ||||| ||| Sbjct 751119 CCAGCAAAGATAAGCCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCC 751178 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| |||||||||||| | | ||| ||||| | || || ||||| || || || Sbjct 751179 TTGACATTCTCGATGGTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCAGC 751238 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || ||||| || ||||| Sbjct 751239 GTTTTCACGAAAATTTGCAT 751258 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | || || || || || || |||||||||||||| ||||| || Sbjct 749584 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 749643 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| ||||| ||||| | | ||| ||||| | ||||| || || || ||||| Sbjct 749644 TTGACATTATCGATTGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGC 749703 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| ||||| |||||||| Sbjct 749704 GTCTTCACGAAAATCTGCAT 749723 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || || | || || || || || || |||||||||||||| ||||| || Sbjct 751468 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 751527 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| ||||||||||| | | ||| ||||| | || || || || || || ||| Sbjct 751528 TTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTAATAGTCTTGCCGGTCAGG 751587 Query 68442 GTCTTGACGAATATCTGCAT 68461 || ||||| || || ||||| Sbjct 751588 GTTTTGACAAAGATTTGCAT 751607 >seq875 Length=1085948 Score = 89.7 bits (98), Expect = 9e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || ||||| || ||||| | || || || || || ||||||||||||||||||||||| Sbjct 311568 TTACCGGCAAAAATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCTTGAATCTTA 311627 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||| || || |||||||| ||| | || ||||| | ||||| || || || || Sbjct 311628 GCCTTCACATTATCAATGGTGTC-GCTCGCCTCAACTTCGAGCGTGATCGTCTTCCCGGT 311686 Query 68438 GAGGGTCTTGACGAATATCTGCATTATG 68465 | ||||| || || || |||||| || Sbjct 311687 CAATGTCTTCACAAAGATTTGCATTTTG 311714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921602112786920