Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq335 96.9 3e-15 seq919 89.7 4e-13 >seq335 Length=1426492 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 |||| ||| |||| |||||||| || |||||||| || ||||| ||||| ||||||| Sbjct 750337 TACCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTTTG 750396 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 ||| | | ||| | |||||||| | ||| || || | || | || |||||||||| Sbjct 750397 CTTTGACATTTTCGATGGTGTCGGAAGCTTCAACTTCGAGTGTGATAGTCTTGCCGGTCA 750456 Query 114361 GAGTTTTTACAAAAATCTGCATG 114383 | || || ||||| || |||||| Sbjct 750457 GCGTCTTCACAAAGATTTGCATG 750479 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 |||| ||| |||| |||||||| || |||||||| || ||||| ||||| ||||| Sbjct 751466 TACCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGG 751525 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 ||| | | || | |||||||| | |||||| || | || | || |||||||||| Sbjct 751526 CTTTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTAATAGTCTTGCCGGTCA 751585 Query 114361 GAGTTTTTACAAAAATCTGCATGG 114384 | ||||| ||||| || ||||||| Sbjct 751586 GGGTTTTGACAAAGATTTGCATGG 751609 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 |||| || |||| |||||||| || |||||||| || ||||| ||||| ||||| Sbjct 750748 TACCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGG 750807 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 ||| | | || | |||||||| | |||||| || | || | ||| |||||||| | Sbjct 750808 CTTTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGA 750867 Query 114361 GAGTTTTTACAAAAATCTGCAT 114382 | || || || ||||||||||| Sbjct 750868 GCGTCTTCACGAAAATCTGCAT 750889 >seq919 Length=964439 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 |||| ||| |||| |||||||||||||| ||||| |||||||| || || ||||| Sbjct 116450 TACCGGCGAAGATCAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTCG 116509 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 ||| | | || | |||||||| | ||||| |||| || | ||| || ||||||| Sbjct 116510 CTTTCACATTCTCGATGGTGTCGGATGCCTCGACTTCCAAAGTGATCGTCTTTCCGGTCA 116569 Query 114361 GAGTTTTTACAAAAATCTGCAT 114382 ||| || || ||||| ||||| Sbjct 116570 AAGTCTTCACGAAAATTTGCAT 116591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420125382996732