Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq919 116 9e-21 seq335 113 1e-19 seq875 107 5e-18 seq963 98.7 2e-15 seq813 98.7 2e-15 seq1052 86.0 1e-11 seq1 84.2 5e-11 >seq919 Length=964439 Score = 116 bits (128), Expect = 9e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||||||||||||||| ||||| ||||| ||||||||||| |||||| Sbjct 116452 CCGGCGAAGATCAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTCGCT 116511 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | ||| | || ||||| | ||||||||||| ||||||| | Sbjct 116512 TTCACATTCTCGATGGTGTCGGATGCCTCGACTTCCAAAGTGATCGTCTTTCCGGTCAAA 116571 Query 288454 GTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| || |||||| || Sbjct 116572 GTCTTCACGAAAATTTGCATTTTG 116595 >seq335 Length=1426492 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||| ||||| |||||||| ||| ||||||||||| || || ||||| || ||| Sbjct 749584 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 749643 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || || || | ||| | ||| |||||||||||||||||||| ||||| || Sbjct 749644 TTGACATTATCGATTGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGC 749703 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| Sbjct 749704 GTCTTCACGAAAATCTGCAT 749723 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||| ||||| |||||||| ||| ||||||||||| || || ||||| || ||| Sbjct 750750 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 750809 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || || || | ||| | ||| |||||||||||||||||||| ||||| || Sbjct 750810 TTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGC 750869 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| Sbjct 750870 GTCTTCACGAAAATCTGCAT 750889 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||||||||| |||||||| ||| ||||||||||| || || || || || ||| Sbjct 750339 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTTTGCT 750398 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || ||||| || | ||| | ||| |||||||| ||||| ||||| |||||||| Sbjct 750399 TTGACATTTTCGATGGTGTCGGAAGCTTCAACTTCGAGTGTGATAGTCTTGCCGGTCAGC 750458 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| || || || ||||| Sbjct 750459 GTCTTCACAAAGATTTGCAT 750478 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||||||||| |||||||| ||| ||||||||||| || || ||||| || ||| Sbjct 751468 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 751527 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || || || | ||| | ||| ||||||||||| || ||||| |||||||| Sbjct 751528 TTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTAATAGTCTTGCCGGTCAGG 751587 Query 288454 GTCTTGACGAATATCTGCAT 288473 || ||||| || || ||||| Sbjct 751588 GTTTTGACAAAGATTTGCAT 751607 >seq875 Length=1085948 Score = 107 bits (118), Expect = 5e-18 Identities = 115/151 (76%), Gaps = 6/151 (4%) Strand=Plus/Plus Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGAT 288386 ||| || || || || |||||||| ||| ||||| ||| ||||| || || || || Sbjct 311567 TTTACCGGCAAAAATGAGACGCTGCTGA---TCTGGCGGGATGCCTTCCTTGTCTTGAAT 311623 Query 288387 TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 || || ||||| || || || | ||||||| || ||||||||||||||||||||||| Sbjct 311624 CTTAGCCTTCACATTATCAATGGTGTCGCTCGCCTCAACTTCGAGCGTGATCGTCTTCCC 311683 Query 288447 GGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| || || || |||||| || Sbjct 311684 GGTCAATGTCTTCACAAAGATTTGCATTTTG 311714 >seq963 Length=907533 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||| || || ||||| ||| || || |||||||| |||||||| || || Sbjct 28390 CCGGCGAAAATAAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCC 28331 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| || | ||||| | || ||||| | ||||| ||||| || |||| Sbjct 28330 TTCACATTTTCGATGGTGTCGCTAGCCTCGACTTCCAAAGTGATGGTCTTGCCAGTCAAT 28271 Query 288454 GTCTTGACGAATATCTGCATTATG 288477 ||||||||||| ||||||||| || Sbjct 28270 GTCTTGACGAAGATCTGCATTTTG 28247 >seq813 Length=135908 Score = 98.7 bits (108), Expect = 2e-15 Identities = 112/149 (75%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||| || || ||||| ||| || || |||||||| |||||||| || || Sbjct 49698 CCGGCGAAAATAAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCC 49639 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| || | ||||| | || ||||| | ||||| ||||| || |||| Sbjct 49638 TTCACATTTTCGATGGTGTCGCTAGCCTCGACTTCCAAAGTGATGGTCTTGCCAGTCAAT 49579 Query 288454 GTCTTGACGAATATCTGCATTATG-TTAT 288481 ||||||||||| ||||||||| || |||| Sbjct 49578 GTCTTGACGAAGATCTGCATTTTGCTTAT 49550 >seq1052 Length=697068 Score = 86.0 bits (94), Expect = 1e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| || ||||| || |||| |||||| || || || || | || | ||||| | || Sbjct 3685 TGGAATGCCTTCCTTGTCCTCGATTTTGGCCTTGACATTGACGATGGTCTCGCTAGCCTC 3626 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| | ||||| ||||| ||||||| |||||||||||| ||||||||| || Sbjct 3625 GACTTCCAAAGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCATTTTG 3571 >seq1 Length=3556246 Score = 84.2 bits (92), Expect = 5e-11 Identities = 107/146 (73%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATT 288387 || || |||||||||| |||||| || ||||| ||| || || || || ||||| Sbjct 2163885 TTACCGGCGAAGATCAAACGCTGCTGG---TCTGGCGGGATGCCCTCCTTGTCTTGGATC 2163941 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || ||||| || || | || | ||| ||||| || || || ||||| || Sbjct 2163942 TTAGCCTTGACGTTCTCAATTGTGTCCGAGGCTTCAACTTCCAGAGTAATGGTCTTGCCA 2164001 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 |||| ||||||||||||||| ||||| Sbjct 2164002 GTCAAAGTCTTGACGAATATTTGCAT 2164027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179627783678958