Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq919 91.5 1e-13 seq1074 89.7 5e-13 seq335 86.0 6e-12 seq875 84.2 2e-11 seq1 84.2 2e-11 >seq919 Length=964439 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 ||||| | || || ||||| ||||||||||| || ||||| || || || | | || || Sbjct 116452 CCGGCGAAGATCAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCCTGGA-TCTTCGC 116510 Query 64364 TTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422 ||| ||| ||| | || || || || ||||| | ||| | ||||| |||||||| Sbjct 116511 TTTCACATTCTCGATGGTGTCGGATGCCTCGACTTCCAAAGTGATCGTCTTTCCGGTCAA 116570 Query 64423 AGTTTTTACGAAAATTTGCATTTT 64446 ||| || ||||||||||||||||| Sbjct 116571 AGTCTTCACGAAAATTTGCATTTT 116594 >seq1074 Length=682288 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 154854 AAACCGGGACAGCGGTCGGGACACATCAATGACCACATTTCGTT-TTGTTGTACGCGTTT 154912 ||||| || || || || ||||||| |||||| |||| | |||||| || || || Sbjct 176084 AAACCAGGGCATTCGTTAGGGCACATCAGTGACCATTTTTCATCGTTGTTG-ACACGCTT 176142 Query 154913 CATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGC 154972 ||| || ||||| || | ||| || ||||| |||||||| || || || ||||| || Sbjct 176143 CATGAATAAATCAGGAATCCATAAGGCGTAAAACAAATCTCGGGCACGTTCCTCTTCGGC 176202 Query 154973 GCCCATGTTTCGCTTTAAATTCAAAAAATC-ATATATGTCGGCGTGCCACGGCTCTAAAT 155031 || |||| |||| | |||||| || ||| || ||||||||||| || || |||| Sbjct 176203 ACCGGTGTTCAATTTTAGCTCCAAAAATTCCATA-ATATCGGCGTGCCAAGGTTCCAAAT 176261 Query 155032 ATACGGC 155038 | | ||| Sbjct 176262 AAATGGC 176268 >seq335 Length=1426492 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || ||||| ||||| || || ||||| || || ||||| || || | Sbjct 749992 CCAGCAAAAATAAGGCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCC 750051 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || ||| ||| | || ||| || || ||||| | |||| || |||||||||| Sbjct 750052 TTGACATTCTCGATGGTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCAGC 750111 Query 64424 GTTTTTACGAAAATTTGCAT 64443 ||||| |||||||||||||| Sbjct 750112 GTTTTCACGAAAATTTGCAT 750131 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| | || |||||||| ||||| || || ||||| || || ||||| || || | Sbjct 751119 CCAGCAAAGATAAGCCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCC 751178 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || ||| ||| | || ||| || || ||||| | |||| || |||||||||| Sbjct 751179 TTGACATTCTCGATGGTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCAGC 751238 Query 64424 GTTTTTACGAAAATTTGCAT 64443 ||||| |||||||||||||| Sbjct 751239 GTTTTCACGAAAATTTGCAT 751258 >seq875 Length=1085948 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| ||||||| |||||||| || || || || ||||| || ||||| || || Sbjct 311568 TTACCGGCAAAAATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCTTGAATCTTA 311627 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | || || | || || ||||| | || | ||||| |||||| Sbjct 311628 GCCTTCACATTATCAATGGTGTCGCTCGCCTCAACTTCGAGCGTGATCGTCTTCCCGGTC 311687 Query 64421 AAAGTTTTTACGAAAATTTGCATTTT 64446 || || || || || ||||||||||| Sbjct 311688 AATGTCTTCACAAAGATTTGCATTTT 311713 >seq1 Length=3556246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| ||||| | || | ||||||||||| || || || || || || ||||| || || Sbjct 2163884 CTTACCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTT 2163943 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| || ||| | ||| || ||| || ||||| | ||| | ||||||||| || Sbjct 2163944 AGCCTTGACGTTCTCAATTGTGTCCGAGGCTTCAACTTCCAGAGTAATGGTCTTGCCAGT 2164003 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || ||||| |||||||| Sbjct 2164004 CAAAGTCTTGACGAATATTTGCAT 2164027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499633801568840